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lh3 / psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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A straight line in result figure. #57

Open se420 opened 10 months ago

se420 commented 10 months ago

Hi, dear friends. I have ran multiple sample in PSMC, most results are normal lines with curves, but in some samples, results are a straight line.(the dark blue one) I checked the input file, and each of them has about 0.3% heterozygosity locus. Samples have normal results have about 0.1% heterozygosity locus. Why did this happened? And I want to know how to avoid this issue. Thank you! se420 屏幕截图 2024-01-04 101454

se420 commented 10 months ago

I found out that editing -r can figure this problem.