Hello Developer,
I polished my nanopore raw genome sequence data with HiC data of the same species. My analysis achieved a BUSCO completeness of 96.6%. However, I tried the PSMC tools several times with either masked or unmasked genomes combined with the resequencing or HiC data, but I did not obtain any plot. Unfortunately, the output diploid.psmcfa file is empty (0 kb) in every time. In this step, I used -q20. Could you please help me troubleshoot the issue?
Hello Developer, I polished my nanopore raw genome sequence data with HiC data of the same species. My analysis achieved a BUSCO completeness of 96.6%. However, I tried the PSMC tools several times with either masked or unmasked genomes combined with the resequencing or HiC data, but I did not obtain any plot. Unfortunately, the output diploid.psmcfa file is empty (0 kb) in every time. In this step, I used -q20. Could you please help me troubleshoot the issue?