Hi, I needed to change the behaviour of the trimming function to drop reads shorter than minlen after trimming instead of providing low quality bases and I added an option to output the cut points (-1 if discarded) in a separate file. If you like the changes to be included I can open a pull request. Also added a Q option to set the threshold with a Phred score
Hi, I needed to change the behaviour of the trimming function to drop reads shorter than minlen after trimming instead of providing low quality bases and I added an option to output the cut points (-1 if discarded) in a separate file. If you like the changes to be included I can open a pull request. Also added a Q option to set the threshold with a Phred score