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lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
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compiling error #126

Closed ldutoit closed 5 years ago

ldutoit commented 5 years ago

Hi,

we struggle to compile seqtk and I am not very familiar at all with compilers

''' gcc -g -Wall -O2 -Wno-unused-function seqtk.c -o seqtk -lz -lm In file included from seqtk.c:36:0: /cm/shared/apps/intel/compilers_and_libraries/2017.6.256/linux/compiler/include/math.h:108:3: error: #error "This Intel is for use with only the Intel compilers!"

error "This Intel is for use with only the Intel compilers!"

^ seqtk.c: In function ‘stk_comp’: seqtk.c:399:16: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable] int la, lb, lc, na, nb, nc, cnt[11]; ^ make: *** [seqtk] Error 1 '''

Thank you for your help

Ludo

lh3 commented 5 years ago

That is the problem with your compiler installation. I believe it has nothing to do with seqtk.

ldutoit commented 5 years ago

Okay, thank you!

And thank you for all your amazing contributions to the field.

Ludovic

On Wed, 5 Dec 2018 at 14:24, Heng Li notifications@github.com wrote:

That is the problem with your compiler installation. I believe it has nothing to do with seqtk.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/lh3/seqtk/issues/126#issuecomment-444322755, or mute the thread https://github.com/notifications/unsubscribe-auth/AELGAdqsEtvH9aGQb1SvWcRTvzfsYlynks5u1yBNgaJpZM4ZB0G4 .