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lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
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subseq -t #128

Closed MrLocuace closed 5 years ago

MrLocuace commented 5 years ago

Hello, I got a script which contains "seqtk subseq -t". I am not able to find what "-t" means. Thank you very much

yzhernand commented 5 years ago

The -t option for seqtk subseq tells seqtk to produce TAB delimited output. Run seqtk subseq and you will get the following message, which explains the options available for that command:

Usage:   seqtk subseq [options] <in.fa> <in.bed>|<name.list>

Options: -t       TAB delimited output
         -l INT   sequence line length [0]

Note: Use 'samtools faidx' if only a few regions are intended.

In general, you can run seqtk COMMAND without any other options to get a help dialog.

MrLocuace commented 5 years ago

Thanks very much !

yzhernand commented 5 years ago

No problem. You should close the issue if you think it is resolved.