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lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
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fastqc outofmemoryError from seqtk generated files #149

Open wbsimey opened 4 years ago

wbsimey commented 4 years ago

I am getting an odd FastQC error when reading in more than one of my seqtk sub samples. I ran, for e.g.: seqtk sample -s100 TP29441.fastq.gz 10000 > ../sub_fq/TP29441_10k.fastq

if I open one seqtk generated file in FastQC, no problem. If I try to open another seqtk generated file in same FastQC window I get an out of memory error.

Any ideas?

wbsimey commented 4 years ago

and fastp cannot open the files at all.