Retrieve paired-end reads with their mates

lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats

MIT License

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Retrieve paired-end reads with their mates #156

Open iquasere opened 4 years ago

iquasere commented 4 years ago

Greetings!

I wanted to know if, when retrieving paired reads with seqtk from a list of names,there is a way to retrieve the paired mate as well.

Thank you for your attention!

schultzm commented 3 years ago

Yes. Run it twice. First time, use R1, second time use R2. On each run, use exactly the same seed value. This use case is given as an example in the user manual.