lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
1.35k stars 311 forks source link

Sample ignores reads zero length reads #164

Open nh13 opened 3 years ago

nh13 commented 3 years ago

Output reads may have zero length after adapter or quality trimming, and for paired FASTQs, one end may be trimmed more than the other. I'd like the zero length reads to be output as I am trimming R1 and R2 independently.