seqtk subseq in.fq name.lst > out.fq didn't work

[li0604]

Hi everyone,

WHen I use the command “seqtk subseq in.fq name.lst > out.fq”， there is no anything in the out.fq. The details showed as following:

other command line works. So I don't what's the reason about this problem.

Would you mind sharing your experience?

Thanks a lot.

[li0604]

[shenwei356]

cut -f 1 name.list > id.list

use id instead

[lh3]

As @shenwei356 said, you need to provide a list of names. @ or 2:N:0:1 is not part of a name.

perl -ne 'print "$1\n" if /^@(\S+)/'

[li0604]

Thanks a lot. @lh3 @shenwei356