search

lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
1.35k stars 310 forks source link

Quality scores #210

Closed lskatz closed 3 months ago

lskatz commented 3 months ago

Hi, would it be possible to compute average quality scores from fastq files in seqtk comp? You can trim based on them but I don't see a mechanism to report them. Thank you!

lskatz commented 3 months ago

Ah I found this in seqtk fqchk $R1 in the ALL line.