Removing whitespace from sequence

lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats

MIT License

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Closed maasha closed 8 years ago

maasha commented 8 years ago

Can we strip whitespace from sequences?

deprekate commented 8 years ago

What kind of functionality?

In just the standard "seq" transformation section? seqtk seq -S in.fa

(I chose S as the flag since \S is the regex for matching non-space)

lh3 commented 8 years ago

Here we go: 1a8319b. Not well tested.