seqtk subseq seems to ignore strand information from the BED file. I would expect the reverse complemented sequence to be returned for BED features on the - strand.
Observed behaviour:
$ cat test.ntd
>id
ACTGACTGAC
$ cat test.bed
id 3 6 name 1000 +
id 3 6 name 1000 -
$ seqtk subseq test.ntd test.bed
>id:4-6
GAC
>id:4-6
GAC
seqtk subseq seems to ignore strand information from the BED file. I would expect the reverse complemented sequence to be returned for BED features on the - strand.
Observed behaviour:
Expected behaviour: