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lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats
MIT License
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Seq and qual on the same line #74

Closed demis001 closed 8 years ago

demis001 commented 8 years ago

It output the quality on the seq line and give the quality on the separate again. The quality next to the sequence should be removed to be a correct format. Any fix? version 1.1

seqtk trimfq -b 17 -e 17 outdir/input/seqWithWallBarcodeCombined.fastq >out_trim.fastq

@HISEQ:111:IHHVDQKLL:1:1000:900:20000 1:N:0:CATATTG GGCTTTTGAGGATACCCCGGTCTCCCAAATAAATACATTCATCTGTAAAGATCGGAAGAGCACACCATATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaO + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaO @HISEQ:111:OJWOAZKVB:1:1000:900:20000 1:N:0:CATATTG GGCTTTTGAAGGCCAGGACTCGTTTGTACCCGTTGATGATAGAATGGGCGATCGGAAGAGCACACTATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaO + AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaO

lh3 commented 8 years ago

It is a bug in 1.1. Please use the latest master branch. Thanks.