Open tseemann opened 7 years ago
### FASTA ### % cat test.fa >lonely GATTACA % seqtk fqchk test.fa min_len: 2147483647; max_len: 0; avg_len: -nan; 0 distinct quality values POS #bases %A %C %G %T %N avgQ errQ %low %high ALL 0 -nan -nan -nan -nan -nan -nan -0.0 -nan -nan ### FASTQ ### % cat test.fq @loner AGTC + HHHH % seqtk fqchk test.fq min_len: 4; max_len: 4; avg_len: 4.00; 1 distinct quality values POS #bases %A %C %G %T %N avgQ errQ %low %high ALL 4 25.0 25.0 25.0 25.0 0.0 39.0 39.0 0.0 100.0 1 1 100.0 0.0 0.0 0.0 0.0 39.0 39.0 0.0 100.0 2 1 0.0 0.0 100.0 0.0 0.0 39.0 39.0 0.0 100.0 3 1 0.0 0.0 0.0 100.0 0.0 39.0 39.0 0.0 100.0 4 1 0.0 100.0 0.0 0.0 0.0 39.0 39.0 0.0 100.0
I guess i'm going to have to write a pull request.
Except I think it may be addressed in this unreleased commit https://github.com/lh3/seqtk/commit/d210c57d2ffa33da147e50f04f5aaaab1c160c8c