Hi and thanks for the tool.
As instructed, I want to use it to map a de novo genome assembly from pacbio long reads to a reference genome. I'm not sure on which presets to use in this case. Is there anyone specific to pacbio, as it seems to be for nanopore? I guess I should use asm5 since I expect the assembly to be similar to the reference, but what about asm10 and asm20? When are these recommended?
Your advice would be much appreciated, thank you for your time and your support
Hi and thanks for the tool. As instructed, I want to use it to map a de novo genome assembly from pacbio long reads to a reference genome. I'm not sure on which presets to use in this case. Is there anyone specific to pacbio, as it seems to be for nanopore? I guess I should use asm5 since I expect the assembly to be similar to the reference, but what about asm10 and asm20? When are these recommended? Your advice would be much appreciated, thank you for your time and your support