lh3 / yak

Yet another k-mer analyzer
MIT License
117 stars 9 forks source link

Large -K is not respected #2

Open mrvollger opened 4 years ago

mrvollger commented 4 years ago

Hi,

This is basically a duplicate/reminder of https://github.com/lh3/minimap2/issues/491 but for yak. In short if -K is too large it only processes one sequence at a time.

Will process many at once:

 ./yak count -K 2000000000  mat_ill.fasta -o  /dev/null

Will only process one at a time:

 ./yak count -K 20000000000  mat_ill.fasta -o  /dev/null

Best, Mitchell