give a list of packages to be loaded in the vignette.

[schoolAccountMajaG]

It would be cool if all the libraries that are used/necessary were listed in the documentation + read in at the beg of the vignette

[cchoirat]

What do you mean by libraries? R packages? If so, it should be in the DESCRIPTION function. If not, should it be in the vignette or in a helper function?

On Wed, Jun 12, 2019 at 2:36 PM Maja notifications@github.com wrote:

It would be cool if all the libraries that are used/necessary were listed in the documentation + read in at the beg of the vignette

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[schoolAccountMajaG]

Yes, R packages should be all listed in one place in the documentation. Also in the vignette for example like that:

We will be using the following packages:

1. "hyspdisp"
2. "openxlsx"
3. "ncdf4"
4. "parallel"
5. "sf"
6. "viridis"
7. "scales"
8. "ggsn"
9. "SplitR"
10. "tidyverse"

The code below will check if you have the necessary packages installed and install them in case they are are not installed.

`

If packages are not installed this code will install them

list.of.packages <- c("hyspdisp", "openxlsx", "ncdf4", "parallel", "sf", "viridis", "scales", "ggsn", "SplitR", "tidyverse")

new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[,"Package"])]

if(length(new.packages)) install.packages(new.packages) `

We load the required packages/libraries below.

library(hyspdisp) library(openxlsx) library(ncdf4) library(parallel) library(sf) library(viridis) library(scales) library(ggsn) library(SplitR) library(tidyverse)

[cchoirat]

You really want/should handle this at the R package level, see, e.g., http://r-pkgs.had.co.nz/description.html.

On Wed, Jun 12, 2019 at 4:14 PM Maja notifications@github.com wrote:

Yes, R packages should be all listed in one place in the documentation. Also in the vignette for example like that:

We will be using the following packages:

1. "hyspdisp"
2. "openxlsx"
3. "ncdf4"
4. "parallel"
5. "sf"
6. "viridis"
7. "scales"
8. "ggsn"
9. "SplitR"
10. "tidyverse"

The code below will check if you have the necessary packages installed and install them in case they are are not installed.

` If packages are not installed this code will install them

list.of.packages <- c("hyspdisp", "openxlsx", "ncdf4", "parallel", "sf", "viridis", "scales", "ggsn", "SplitR", "tidyverse")

new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[,"Package"])]

if(length(new.packages)) install.packages(new.packages) `

We load the required packages/libraries below.

library(hyspdisp) library(openxlsx) library(ncdf4) library(parallel) library(sf) library(viridis) library(scales) library(ggsn) library(SplitR) library(tidyverse)

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[schoolAccountMajaG]

handled at package level in disperseR