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lhilbert / VisitorGene_PseudoTime

Image analysis scripts to reconstruct gene-cluster visits from fluorescence microscopy data obtained from fixed samples
MIT License
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Command line display of rejected images during Quality Control #1

Closed lhilbert closed 5 months ago

lhilbert commented 5 months ago

Affected script: Segmentation_FeatureExtraction.m

Problematic behavior: the displayed gene and stage names do not match with the displayed file paths, especially condition folder and image number.

Idea of how to test and fix: check if in the for loop to display what data are rejected there is an index problem or some sort of confusion, then fix and check command line output consistency, and also against the saved .mat Image files that are reference vis the file path.

lhilbert commented 5 months ago

There was an indexing mistake in the code. Fixed, and the file path and the gene and stage name display on the command line match up now.