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lhilbert / active-microemulsion

Package for the lattice-based simulation of active polymer microemulsions, such as dense DNA suspensions
BSD 2-Clause "Simplified" License
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Bug in scheduling flavopiridol inhibition timing? #26

Open lhilbert opened 5 years ago

lhilbert commented 5 years ago

When I schedule a complete simulation set on. bwUniCluster, it seems that the early flavopiridol inhibition time points are missing. I was looking for where the timing of the inhibition events is actually set in the code, but couldn't find....

I think there's something off, in the sense that early flavopiridol times are not included. At least the inhibition at times <=10 minutes (where any activity comes in at all) should give 0 RNA level. But we have no 0 RNA level, so I am concluding that at least the inhibition at exactly 10 minutes is not executed. @churli

churli commented 5 years ago

At first sight it seems that we are simply not scheduling simulations with inhibition time <= than activation time. I will need to better check the scheduling python script, but it seems we need to add some combinations of parameters to also get these simulations.