Open lhilbert opened 5 years ago
Now trying to set it by changing the setting in moab-job.sh, it seems to be hard-coded there. Not the prettiest way, but will give results and confirm if this is the point where it is currently actually controlled.
Changing the chromatin fraction in moab-job.sh no longer crashes. But it seems the change of setting is also not having any effect on the initialization of chromatin chains. I suspect this is due to the sparse initialization flag. Check inside the chain configurator if that overrides the effect of the chromatin fraction.
It seems the scheduling code does not feed arguments to change the chromatin fraction through to job scheduling properly. When I enter the "--chain-generator-C 0.3" argument, I get a crash and the simulation is aborted.
Also, changing the default setting in chainConfigurator input arguments is ineffective, there is still 50% chromatin in the. simulation output.