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lhilbert / active-microemulsion

Package for the lattice-based simulation of active polymer microemulsions, such as dense DNA suspensions
BSD 2-Clause "Simplified" License
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Changes to chromatin fraction in chain generation lead to crash #33

Open lhilbert opened 5 years ago

lhilbert commented 5 years ago

It seems the scheduling code does not feed arguments to change the chromatin fraction through to job scheduling properly. When I enter the "--chain-generator-C 0.3" argument, I get a crash and the simulation is aborted.

Also, changing the default setting in chainConfigurator input arguments is ineffective, there is still 50% chromatin in the. simulation output.

lhilbert commented 5 years ago

Now trying to set it by changing the setting in moab-job.sh, it seems to be hard-coded there. Not the prettiest way, but will give results and confirm if this is the point where it is currently actually controlled.

lhilbert commented 5 years ago

Changing the chromatin fraction in moab-job.sh no longer crashes. But it seems the change of setting is also not having any effect on the initialization of chromatin chains. I suspect this is due to the sparse initialization flag. Check inside the chain configurator if that overrides the effect of the chromatin fraction.