Visualization of accumulated RNA levels

lhilbert / active-microemulsion

Package for the lattice-based simulation of active polymer microemulsions, such as dense DNA suspensions

BSD 2-Clause "Simplified" License

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Visualization of accumulated RNA levels #9

Closed churli closed 5 years ago

churli commented 5 years ago

With the introduction of support for RNA accumulation we also need to enhance visualization code to produce PGM files with RNA channel levels consistent with RNA accumulated levels.

This could be implemented in different ways:

Either we assign a static RNACounter --> Intensity value mapping
or we rescale the Intensity values in some ways. This is still to be defined.

churli commented 5 years ago

As first prototype, we have decided to map the RnaCounter to the PGM intensity value directly. In case we exceed 255, we simply saturate there, log a message and keep 255 in the PGM. In case this saturation actually takes place, we will then see what to do to solve it.