yap: error: unrecognized arguments (yap start-from-cell-fastq)

[Yoon-Insoo]

Hi, I'm trying to use YAP with directly downloaded demultiplexed cell-level FASTQ files from the snm3C-seq dataset through NEMO (https://assets.nemoarchive.org/dat-sig83t9).

So i was using yap start-from-cell-fastq, but there was an error with my command.

yap start-from-cell-fastq -o outdir -config m3c-mm10.mapping_config.ini -fq sample/*.fq.gz

yap: error: unrecognized arguments: sample/10E_HCV_3C_1-1-K6-A13-R2.fq.gz sample/10E_HCV_3C_1-1-K6-A14-R1.fq.gz sample/10E_HCV_3C_1-1-K6-A14-R2.fq.gz sample/10E_HCV_3C_1-1-K6-A1-R1.fq.gz sample/10E_HCV_3C_1-1-K6-A1-R2.fq.gz

I have 6 fq.gz files in sample/ directory. 10E_HCV_3C_1-1-K6-A13-R1.fq.gz 10E_HCV_3C_1-1-K6-A13-R2.fq.gz 10E_HCV_3C_1-1-K6-A14-R1.fq.gz 10E_HCV_3C_1-1-K6-A14-R2.fq.gz 10E_HCV_3C_1-1-K6-A1-R1.fq.gz 10E_HCV_3C_1-1-K6-A1-R2.fq.gz

Please tell me what is my mistake.

Thank you.