Implement BaseDS - Githubissues

lhqing / whole_mouse_brain

misc code for whole mouse brain analysis

MIT License

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Implement BaseDS #13

Closed lhqing closed 2 years ago

lhqing commented 2 years ago

How to store 2500 cluster level ALLC files and retrieve data by region efficiently?

A large zarr based matrix
All genome locations are recorded, so it is easy to reduce the data with any bin size
mC type and count type as additional dimensions

TODO

[x] BaseDS call DMS
[x] BaseDS to region DS conversion based on any regions
[x] BaseDS to region DS conversion based on fixed bins