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liamholtlab / GEMspa

GNU General Public License v3.0
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Error on linux_SS angles (calculate_step_sizes_and_angles()) #4

Closed sameerbau closed 2 years ago

sameerbau commented 2 years ago 
Traj_XYT091.csv_crop.csv 
SS/Angles number of tracks: 392
Traceback (most recent call last):
  File "/home/LAB/Desktop/GEMspa/main_gui.py", line 587, in on_go
    traj_an.calculate_step_sizes_and_angles()
  File "/home/Lab/Desktop/GEMspa/trajectory_analysis.py", line 1862, in calculate_step_sizes_and_angles
    cur_tlag_data = cur_tlag_data[np.logical_not(np.isnan(cur_tlag_data))]
TypeError: ufunc 'isnan' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe''

hello!

Getting this error when running this file: https://drive.google.com/drive/folders/1QR9ezX3PIXFxk7EHhNiNvKJnb_VucM8o?usp=sharing

Basically the diffusion values run well but the angles stuff crashes. The output folder shows only the 3 diffusion plots. Any advice?

Sameer

snkeegan commented 2 years ago

I wasn't able to re-create this error from the file you sent, but I have added a check that I'm hoping will fix it. Please download the latest code from the main branch.

sameerbau commented 2 years ago

Works! Thank you!