When I ran function phylANOVA, I got warnings as below
Warning: no labels for x. Assuming order of tree$tip.label.
Warning: no labels for y. Assuming order of tree$tip.label.
I am wondering how to assign taxon order to x and y.
The commands were used as below
dat<-read.table("test.txt")
tre<-read.tree(file="test.nwk")
phylANOVA(tre, dat$V3,dat$V2,nsim=1000,posthoc=TRUE, p.adj="holm")
Hi there
When I ran function phylANOVA, I got warnings as below Warning: no labels for x. Assuming order of tree$tip.label. Warning: no labels for y. Assuming order of tree$tip.label. I am wondering how to assign taxon order to x and y.
The commands were used as below dat<-read.table("test.txt") tre<-read.tree(file="test.nwk") phylANOVA(tre, dat$V3,dat$V2,nsim=1000,posthoc=TRUE, p.adj="holm")
Many thanks Edison