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liamrevell / phytools

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cophylo object doesn't plot all branches #16

Closed chirila closed 7 years ago

chirila commented 7 years ago

I am plotting two trees (one with 194 taxa, the other 262) as a cophylo object. The tree compiles without errors. The smaller tree plots correctly, but the larger one loses branches (see screenshot of partial tree below). This was using pdf() screenshot 2017-08-30 11 20 04

Plotting directly to RStudio's graphics display produces the following screenshot 2017-08-30 11 25 36

Do you know if this is a memory/plotting issue with R, or something to do with the code?

liamrevell commented 7 years ago

I can't comment too much on the Rstudio error; however the other issue is a bug that has been fixed. All you need to do is update from GitHub using devtools & you should be fine.

More information can be seen on my blog: http://blog.phytools.org/2017/08/bug-fix-in-plotcophylo-for-co.html.

chirila commented 7 years ago

Thanks, that fixed it.