lianos / sparrow

Take command of your set enrichment analyses.
https://lianos.github.io/sparrow/
MIT License
20 stars 1 forks source link

Uses msigdbr packages instead of msigdb.data #1

Closed lianos closed 3 years ago

lianos commented 3 years ago

The getMSigGeneSetDb function updated to use msigdbr, and the msigdb.data package has been dropped as a dependency.

The functionality provided is still roughly the same, but promotion of subcategories to main collections is a bit different:

The implementation of scale_rows has changed a bit. Be very weary of setting scale = TRUE when normalizing against a subset of samples.