Closed oisinskinnader closed 3 years ago
After install conda and using the following commands: $conda config --add channels defaults $conda config --add channels bioconda $conda config --add channels conda-forge
I created a pgcgap environment for the installation of PGCGAP. $conda create -n pgcgap python=3 Activated the pgcgap environment. $conda activate pgcgap However, during Installation of PGCGAP using: $conda install pgcgap I get the following issue:
Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Where am I going wrong? What should I do?
Thanks,
Oisin
conda install pgcgap=1.0.30
conda remove -n pgcgap --all
and then run:
conda create -n pgcgap pgcgap
After install conda and using the following commands: $conda config --add channels defaults $conda config --add channels bioconda $conda config --add channels conda-forge I created a pgcgap environment for the installation of PGCGAP. $conda create -n pgcgap python=3 Activated the pgcgap environment. $conda activate pgcgap However, during Installation of PGCGAP using: $conda install pgcgap I get the following issue: Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested package -> Available versions Where am I going wrong? What should I do? Thanks, Oisin
- Have a try with the following command:
conda install pgcgap=1.0.30
- or remove the pgcgap environment with the command:
conda remove -n pgcgap --all
and then run:
conda create -n pgcgap pgcgap
- If it does not work, please let me know.
Here is how it went: **(pgcgap) C:\Users\oisin>conda install pgcgap=1.0.30 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: - Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
(pgcgap) C:\Users\oisin>conda remove -n pgcgap --all
CondaEnvironmentError: cannot remove current environment. deactivate and run conda remove again
(pgcgap) C:\Users\oisin>conda create -n pgcgap pgcgap WARNING: A conda environment already exists at 'C:\Users\oisin\miniconda3\envs\pgcgap' Remove existing environment (y/[n])? y
Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: / Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError:**
Not really sure what the problem is.
@oisinskinnader
conda deactivate pgcgap
conda remove -n pgcgap --all
conda create -n pgcgap pgcgap
@oisinskinnader
- Before you remove an environment, you should first deactivate it. So what you need to do is shown as following:
conda deactivate pgcgap conda remove -n pgcgap --all conda create -n pgcgap pgcgap
No, I did try deactivate it but got the following:
(pgcgap) C:\Users\oisin>conda deactivate pgcgap deactivate does not accept arguments remainder_args: ['pgcgap']
I think did those commands but to no avail.
@oisinskinnader Sorry, please type
"conda deactivate" instead of "conda deactivate pgcgap"
@oisinskinnader Sorry, please type
"conda deactivate" instead of "conda deactivate pgcgap"
Yeah that worked but there's still problems.
(pgcgap) C:\Users\oisin>conda deactivate
(base) C:\Users\oisin>conda remove -n pgcgap --all
DirectoryNotACondaEnvironmentError: The target directory exists, but it is not a conda environment. Use 'conda create' to convert the directory to a conda environment. target directory: C:\Users\oisin\miniconda3\envs\pgcgap
(base) C:\Users\oisin>conda create -n pgcgap pgcgap WARNING: A directory already exists at the target location 'C:\Users\oisin\miniconda3\envs\pgcgap' but it is not a conda environment. Continue creating environment (y/[n])? y
Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: / Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError:
@oisinskinnader Do you have any software installed which can be connected remotely to your computer, that I can install PGCGAP for you? Such as teamviewer
@oisinskinnader Do you have any software installed which can be connected remotely to your computer, that I can install PGCGAP for you? Such as teamviewer
Yes. I just sent you an email about that.
Thanks.
@oisinskinnader PGCGAP v1.0.31 is available, I have re-submitted an environmental file to Conda to accelerate installation speed, and there are some instructions to solve the installation problems which can be found at https://liaochenlanruo.github.io/pgcgap/#Installation
After install conda and using the following commands: $conda config --add channels defaults $conda config --add channels bioconda $conda config --add channels conda-forge
I created a pgcgap environment for the installation of PGCGAP. $conda create -n pgcgap python=3 Activated the pgcgap environment. $conda activate pgcgap However, during Installation of PGCGAP using: $conda install pgcgap I get the following issue:
Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Where am I going wrong? What should I do?
Thanks,
Oisin