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liaoherui / StrainScan

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01615-w
MIT License
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Genomes used to build the database #19

Open Wenhai-Zhang opened 5 months ago

Wenhai-Zhang commented 5 months ago

Could you provide me with the assembly_accession of the Escherichia coli (1433) used to build the database?

Thank you in advance!

liaoherui commented 5 months ago

Hi, Wenhai, thanks for using StrainScan!

The file containing the assembly accession is attached (the last column of the file). Any other problems or requirements, please let me know! hclsMap_95_recls.txt