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liaoherui / VirStrain

An RNA virus strain-level identification tool for short reads.
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02609-x
MIT License
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Error in database generation 2 #10

Closed minhtrung1997 closed 1 year ago

minhtrung1997 commented 1 year ago

MAFFT.clustal.fasta.txt

The error is: error.txt

The command run is:

#!/bin/bash -euo pipefail
virstrain_build -i MAFFT.clustal.fasta -d VIRSTRAIN_DB -s 1
echo -e "VIRSTRAIN version 1.12" > virstrain.version.txt
liaoherui commented 1 year ago

Hi, this is a bug for bioconda version of VirStrain, will fix it asap.

You can try the github version, which has been tested by me and it works fine.

liaoherui commented 1 year ago

Hi, I have fixed this bug in v1.13. The package has been updated in PyPI, and the Bioconda version v1.13 will be updated automatically later.

Thanks for using VirStrain. Any other problems or suggestions, feel free to let me know.

liaoherui commented 1 year ago

Hi, the bioconda version v1.13 of VirStrain is available now. I have tested it and the bug is fixed!

If there are no other problems, I will close this issue later. Thanks!