When summary with -a is called on a property that is not a list, but histogram is made then histogram bins are specified incorrectly:
$abcd summary -p "volume" -q "cell" -a
Traceback (most recent call last):
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/numpy/lib/histograms.py", line 412, in _get_bin_edges
n_equal_bins = operator.index(bins)
TypeError: 'NoneType' object cannot be interpreted as an integer
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/tks32/programs/miniconda3/envs/tum_test/bin/abcd", line 8, in <module>
sys.exit(main())
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/frontends/commandline/parser.py", line 121, in main
callback_func(**kwargs)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/frontends/commandline/decorators.py", line 15, in wrapper
func(*args, config=config, **kwargs)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/frontends/commandline/decorators.py", line 48, in wrapper
func(*args, db=db, query=query, **kwargs)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/frontends/commandline/commands.py", line 138, in summary
data = db.hist(p, query=query, bins=bins, truncate=truncate)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/backends/atoms_pymongo.py", line 401, in hist
return histogram(name, data, **kwargs)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/backends/atoms_pymongo.py", line 452, in histogram
return _hist_float(name, data, bins)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/abcd/backends/atoms_pymongo.py", line 476, in _hist_float
hist, bin_edges = np.histogram(data, bins=bins)
File "<__array_function__ internals>", line 6, in histogram
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/numpy/lib/histograms.py", line 785, in histogram
bin_edges, uniform_bins = _get_bin_edges(a, bins, range, weights)
File "/home/tks32/programs/miniconda3/envs/tum_test/lib/python3.7/site-packages/numpy/lib/histograms.py", line 415, in _get_bin_edges
'`bins` must be an integer, a string, or an array')
TypeError: `bins` must be an integer, a string, or an array
When summary with
-a
is called on a property that is not a list, but histogram is made then histogram bins are specified incorrectly: