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libMesh / libmesh

libMesh github repository
http://libmesh.github.io
GNU Lesser General Public License v2.1
639 stars 285 forks source link

DTK_MeshContainer.hpp: No such file or directory #1849

Closed yw5aj closed 5 years ago

yw5aj commented 5 years ago

Dear all,

Sorry for bothering. Could you please help me install libmesh?

I am using Windows 10 64 bit, Windows Subsystem Linux, Ubuntu 18.04. I have done:

git clone git://github.com/libMesh/libmesh.git 
cd libmesh
./configure
make

The process went on perfect until this happened:

In file included from ./include/libmesh/dtk_adapter.h:27:0,
                 from src/solution_transfer/dtk_adapter.C:24:
./include/libmesh/dtk_evaluator.h:31:10: fatal error: DTK_MeshContainer.hpp: No such file or directory
 #include <DTK_MeshContainer.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
Makefile:16028: recipe for target 'src/solution_transfer/libmesh_dbg_la-dtk_adapter.lo' failed
make[1]: *** [src/solution_transfer/libmesh_dbg_la-dtk_adapter.lo] Error 1
make[1]: Leaving directory '/mnt/x/libmesh/libmesh'
Makefile:29399: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1

And I checked that DTK_MeshContainer.hpp is not in the source code.

Was I doing something wrong? Any hint would be greatly appreciated.

Best, Shawn

pbauman commented 5 years ago

And I checked that DTK_MeshContainer.hpp is not in the source code.

That's an external header, part of DTK package in Trillions.

Please post your config.log file? It looks like configure thinks you have Trilinos and DTK, but it's not finding it when you build. Or that particular part of Trilinos has changed up their header files. Or something along those lines.

yw5aj commented 5 years ago

Thank you @pbauman for your prompt response! And sorry for my late reply.

I found out later that this might be due to that I was using the git version 01381f2ae18d401864fddbad0cc09ee3cf73320a rather than the stable release; the problem went away with the stable release. I'd be happy to close this ticket if you see appropriate - please let me know!

(Below is my config.log just in case)

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by libmesh configure 1.4.0-pre, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure 

## --------- ##
## Platform. ##
## --------- ##

hostname = Shawn-K430
uname -m = x86_64
uname -r = 4.4.0-17134-Microsoft
uname -s = Linux
uname -v = #137-Microsoft Thu Jun 14 18:46:00 PST 2018

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/yw5aj/bin
PATH: /home/yw5aj/.local/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
PATH: /mnt/c/Program Files/Docker/Docker/resources/bin
PATH: /mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common
PATH: /mnt/c/ProgramData/Oracle/Java/javapath_target_590844921
PATH: /mnt/c/SIMULIA/Commands
PATH: /mnt/c/Program Files/Microsoft MPI/Bin
PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt
PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt
PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler
PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler
PATH: /mnt/c/Program Files (x86)/Intel/iCLS Client
PATH: /mnt/c/Program Files/Intel/iCLS Client
PATH: /mnt/c/Windows/System32
PATH: /mnt/c/Windows
PATH: /mnt/c/Windows/System32/wbem
PATH: /mnt/c/Windows/System32/WindowsPowerShell/v1.0
PATH: /mnt/c/Program Files/Intel/Intel(R) Management Engine Components/DAL
PATH: /mnt/c/Program Files/Intel/Intel(R) Management Engine Components/IPT
PATH: /mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT
PATH: /mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL
PATH: /mnt/c/Program Files (x86)/Windows Kits/8.1/Windows Performance Toolkit
PATH: /mnt/c/Program Files/Microsoft SQL Server/130/Tools/Binn
PATH: /mnt/c/Program Files/Microsoft SQL Server/110/Tools/Binn
PATH: /mnt/c/Program Files/Microsoft SQL Server/120/Tools/Binn
PATH: /mnt/c/Program Files/MATLAB/R2017a/runtime/win64
PATH: /mnt/c/Program Files/MATLAB/R2017a/bin
PATH: /mnt/c/Program Files/Microsoft SQL Server/Client SDK/ODBC/110/Tools/Binn
PATH: /mnt/c/Program Files (x86)/Microsoft SQL Server/120/Tools/Binn
PATH: /mnt/c/Program Files/Microsoft SQL Server/120/DTS/Binn
PATH: /mnt/c/Windows/System32
PATH: /mnt/c/Windows
PATH: /mnt/c/Windows/System32/wbem
PATH: /mnt/c/Windows/System32/WindowsPowerShell/v1.0
PATH: /mnt/c/Program Files/Git/cmd
PATH: /mnt/c/Program Files (x86)/Skype/Phone
PATH: /mnt/c/Program Files (x86)/Git/cmd
PATH: /mnt/c/Program Files (x86)/GitExtensions
PATH: /mnt/c/Program Files/gnuplot/bin
PATH: /mnt/c/Windows/System32/OpenSSH
PATH: /mnt/c/Program Files (x86)/MiKTeX 2.9/miktex/bin
PATH: /mnt/c/Program Files (x86)/LyX 2.3/Perl/bin
PATH: /mnt/c/Users/Shawn/Anaconda3
PATH: /mnt/c/Users/Shawn/Anaconda3/Scripts
PATH: /mnt/c/Users/Shawn/Anaconda3/Library/bin
PATH: /mnt/c/Users/Shawn/AppData/Roaming/local/bin
PATH: /mnt/c/Users/Shawn/.cargo/bin
PATH: /mnt/c/Users/Shawn/AppData/Local/Microsoft/WindowsApps
PATH: /mnt/c/ffmpeg/bin
PATH: /mnt/c/gmsh
PATH: /mnt/c/tetgen
PATH: /mnt/c/Program Files/Geth
PATH: /mnt/x/YuxiangWang/Dental/CGAL-4.11/auxiliary/gmp/lib
PATH: /mnt/c/Program Files/CMake/bin
PATH: /mnt/c/local/boost_1_65_1/lib64-msvc-14.1
PATH: /mnt/c/Qt/5.9.2/msvc2015_64/bin
PATH: /mnt/c/Qt/5.9.2/msvc2015_64/lib
PATH: /mnt/c/dev/libQGLViewer-2.7.1
PATH: /mnt/c/dev/libQGLViewer-2.7.1/QGLViewer
PATH: /mnt/c/dev/CGAL-4.11/build/bin
PATH: /mnt/c/dev/CGAL-4.11/build/lib
PATH: /mnt/c/dev/CGAL-4.11/auxiliary/gmp/lib
PATH: /mnt/c/Users/Shawn/AppData/Local/GitHubDesktop/bin
PATH: /mnt/c/Program Files/febio-2.6.4/bin
PATH: /mnt/c/Program Files/Microsoft VS Code/bin
PATH: /mnt/c/Users/Shawn/AppData/Local/Microsoft/WindowsApps
PATH: /snap/bin

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3662: result: ---------------------------------------------
configure:3664: result: ----------- Configuring libMesh -------------
configure:3666: result: ---------------------------------------------
configure:3708: checking build system type
configure:3722: result: x86_64-unknown-linux-gnu
configure:3742: checking host system type
configure:3755: result: x86_64-unknown-linux-gnu
configure:3775: checking target system type
configure:3788: result: x86_64-unknown-linux-gnu
configure:3861: checking for a BSD-compatible install
configure:3929: result: /usr/bin/install -c
configure:3940: checking whether build environment is sane
configure:3995: result: yes
configure:4146: checking for a thread-safe mkdir -p
configure:4185: result: /bin/mkdir -p
configure:4192: checking for gawk
configure:4208: found /usr/bin/gawk
configure:4219: result: gawk
configure:4230: checking whether make sets $(MAKE)
configure:4252: result: yes
configure:4281: checking whether make supports nested variables
configure:4298: result: yes
configure:4387: checking whether UID '1000' is supported by ustar format
configure:4390: result: yes
configure:4397: checking whether GID '1000' is supported by ustar format
configure:4400: result: yes
configure:4408: checking how to create a ustar tar archive
configure:4419: tar --version
tar (GNU tar) 1.29
Copyright (C) 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by John Gilmore and Jay Fenlason.
configure:4422: $? = 0
configure:4462: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar
configure:4465: $? = 0
configure:4469: tar -xf - <conftest.tar
configure:4472: $? = 0
configure:4474: cat conftest.dir/file
GrepMe
configure:4477: $? = 0
configure:4490: result: gnutar
configure:4553: checking whether make supports nested variables
configure:4570: result: yes
configure:4609: checking whether to enable maintainer-specific portions of Makefiles
configure:4618: result: no
configure:4638: checking for src/base/libmesh.C
configure:4651: result: yes
configure:4690: checking for perl
configure:4708: found /usr/bin/perl
configure:4720: result: /usr/bin/perl
configure:4745: checking for style of include used by make
configure:4773: result: GNU
configure:4896: checking for mpicxx
configure:4912: found /usr/bin/mpicxx
configure:4923: result: mpicxx
configure:4950: checking for C++ compiler version
configure:4959: mpicxx --version >&5
g++ (Ubuntu 7.3.0-16ubuntu3) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4970: $? = 0
configure:4959: mpicxx -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.3.0-16ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --with-as=/usr/bin/x86_64-linux-gnu-as --with-ld=/usr/bin/x86_64-linux-gnu-ld --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.3.0 (Ubuntu 7.3.0-16ubuntu3) 
configure:4970: $? = 0
configure:4959: mpicxx -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:4970: $? = 1
configure:4959: mpicxx -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:4970: $? = 1
configure:4990: checking whether the C++ compiler works
configure:5012: mpicxx    conftest.cpp  >&5
configure:5016: $? = 0
configure:5064: result: yes
configure:5067: checking for C++ compiler default output file name
configure:5069: result: a.out
configure:5075: checking for suffix of executables
configure:5082: mpicxx -o conftest    conftest.cpp  >&5
configure:5086: $? = 0
configure:5108: result: 
configure:5130: checking whether we are cross compiling
configure:5138: mpicxx -o conftest    conftest.cpp  >&5
configure:5142: $? = 0
configure:5149: ./conftest
configure:5153: $? = 0
configure:5168: result: no
configure:5173: checking for suffix of object files
configure:5195: mpicxx -c   conftest.cpp >&5
configure:5199: $? = 0
configure:5220: result: o
configure:5224: checking whether we are using the GNU C++ compiler
configure:5243: mpicxx -c   conftest.cpp >&5
configure:5243: $? = 0
configure:5252: result: yes
configure:5261: checking whether mpicxx accepts -g
configure:5281: mpicxx -c -g  conftest.cpp >&5
configure:5281: $? = 0
configure:5322: result: yes
configure:5347: checking dependency style of mpicxx
configure:5458: result: gcc3
configure:5498: result: <<< C++ compiler is gcc-7.x >>>
configure:5740: checking for mpicc
configure:5756: found /usr/bin/mpicc
configure:5767: result: mpicc
configure:5798: checking for C compiler version
configure:5807: mpicc --version >&5
gcc (Ubuntu 7.3.0-16ubuntu3) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5818: $? = 0
configure:5807: mpicc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.3.0-16ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --with-as=/usr/bin/x86_64-linux-gnu-as --with-ld=/usr/bin/x86_64-linux-gnu-ld --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.3.0 (Ubuntu 7.3.0-16ubuntu3) 
configure:5818: $? = 0
configure:5807: mpicc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:5818: $? = 1
configure:5807: mpicc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:5818: $? = 1
configure:5822: checking whether we are using the GNU C compiler
configure:5841: mpicc -c   conftest.c >&5
configure:5841: $? = 0
configure:5850: result: yes
configure:5859: checking whether mpicc accepts -g
configure:5879: mpicc -c -g  conftest.c >&5
configure:5879: $? = 0
configure:5920: result: yes
configure:5937: checking for mpicc option to accept ISO C89
configure:6000: mpicc  -c   conftest.c >&5
configure:6000: $? = 0
configure:6013: result: none needed
configure:6038: checking whether mpicc understands -c and -o together
configure:6060: mpicc -c conftest.c -o conftest2.o
configure:6063: $? = 0
configure:6060: mpicc -c conftest.c -o conftest2.o
configure:6063: $? = 0
configure:6075: result: yes
configure:6094: checking dependency style of mpicc
configure:6205: result: gcc3
configure:6316: checking for mpif90
configure:6332: found /usr/bin/mpif90
configure:6343: result: mpif90
configure:6369: checking for Fortran compiler version
configure:6378: mpif90 --version >&5
GNU Fortran (Ubuntu 7.3.0-16ubuntu3) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6389: $? = 0
configure:6378: mpif90 -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.3.0-16ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --with-as=/usr/bin/x86_64-linux-gnu-as --with-ld=/usr/bin/x86_64-linux-gnu-ld --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.3.0 (Ubuntu 7.3.0-16ubuntu3) 
configure:6389: $? = 0
configure:6378: mpif90 -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:6389: $? = 1
configure:6378: mpif90 -qversion >&5
gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'?
gfortran: fatal error: no input files
compilation terminated.
configure:6389: $? = 1
configure:6398: checking whether we are using the GNU Fortran compiler
configure:6411: mpif90 -c   conftest.F >&5
configure:6411: $? = 0
configure:6420: result: yes
configure:6426: checking whether mpif90 accepts -g
configure:6437: mpif90 -c -g  conftest.f >&5
configure:6437: $? = 0
configure:6445: result: yes
configure:6546: checking for mpif77
configure:6562: found /usr/bin/mpif77
configure:6573: result: mpif77
configure:6599: checking for Fortran 77 compiler version
configure:6608: mpif77 --version >&5
GNU Fortran (Ubuntu 7.3.0-16ubuntu3) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6619: $? = 0
configure:6608: mpif77 -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.3.0-16ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --with-as=/usr/bin/x86_64-linux-gnu-as --with-ld=/usr/bin/x86_64-linux-gnu-ld --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.3.0 (Ubuntu 7.3.0-16ubuntu3) 
configure:6619: $? = 0
configure:6608: mpif77 -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:6619: $? = 1
configure:6608: mpif77 -qversion >&5
gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'?
gfortran: fatal error: no input files
compilation terminated.
configure:6619: $? = 1
configure:6628: checking whether we are using the GNU Fortran 77 compiler
configure:6641: mpif77 -c  conftest.F >&5
configure:6641: $? = 0
configure:6650: result: yes
configure:6656: checking whether mpif77 accepts -g
configure:6667: mpif77 -c -g conftest.f >&5
configure:6667: $? = 0
configure:6675: result: yes
configure:6747: checking for a sed that does not truncate output
configure:6811: result: /bin/sed
configure:6817: checking for C++ compiler vendor
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__ICC) || defined(__ECC) || defined(__INTEL_COMPILER))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__xlc__) || defined(__xlC__) || defined(__IBMC__) || defined(__IBMCPP__))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__PATHCC__) || defined(__PATHSCALE__))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__clang__))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(_CRAYC))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__FUJITSU))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp:17:38: error: operator "defined" requires an identifier
       #if !(defined(SDCC) || defined())
                                      ^
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(SDCC) || defined())
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:18:9: error: 'thisisanerror' was not declared in this scope
         thisisanerror;
         ^~~~~~~~~~~~~
configure:6865: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|       #if !(defined(__SDCC))
|         thisisanerror;
|       #endif
| 
|   ;
|   return 0;
| }
configure:6865: mpicxx -c   conftest.cpp >&5
configure:6865: $? = 0
configure:6873: result: gnu
configure:7355: checking whether mpicxx supports C++11 features by default
configure:7391: mpicxx -c   conftest.cpp >&5
configure:7391: $? = 0
configure:7398: result: yes
configure:8224: result: No build methods specified, defaulting to "dbg devel opt"
configure:8232: result: <<< Configuring libMesh with methods "dbg devel opt" >>>
configure:8381: result: <<< Compiler warnings are just warnings >>>
configure:8451: result: <<< Disabling extra paranoid compiler warnings >>>
configure:8489: checking for C++11 auto keyword support
configure:8516: mpicxx -c      conftest.cpp >&5
configure:8516: $? = 0
configure:8518: result: yes
configure:8558: checking for C++11 range-based for loop support
configure:8593: mpicxx -c      conftest.cpp >&5
configure:8593: $? = 0
configure:8595: result: yes
configure:8637: checking for C++11 initializer list support
configure:8665: mpicxx -c      conftest.cpp >&5
configure:8665: $? = 0
configure:8667: result: yes
configure:8707: checking for C++11 std::unique_ptr support
configure:8743: mpicxx -c      conftest.cpp >&5
configure:8743: $? = 0
configure:8745: result: yes
configure:8789: checking for C++11 std::make_unique workaround support
configure:8828: mpicxx -c      conftest.cpp >&5
configure:8828: $? = 0
configure:8830: result: yes
configure:8870: checking for C++11 std::tuple support
configure:8916: mpicxx -c      conftest.cpp >&5
configure:8916: $? = 0
configure:8918: result: yes
configure:8957: checking for C++11 lambda support
configure:8991: mpicxx -c      conftest.cpp >&5
configure:8991: $? = 0
configure:8993: result: yes
configure:9033: checking for C++11 fixed type enumeration support
configure:9060: mpicxx -c      conftest.cpp >&5
configure:9060: $? = 0
configure:9062: result: yes
configure:9101: checking for C++11 fixed type enumeration forward declaration support
configure:9133: mpicxx -c      conftest.cpp >&5
configure:9133: $? = 0
configure:9135: result: yes
configure:9174: checking for C++11 override keyword support
configure:9205: mpicxx -c      conftest.cpp >&5
configure:9205: $? = 0
configure:9207: result: yes
configure:9247: checking for C++11 move constructor support
configure:9287: mpicxx -c      conftest.cpp >&5
configure:9287: $? = 0
configure:9289: result: yes
configure:9329: checking for C++11 deleted functions support
configure:9358: mpicxx -c      conftest.cpp >&5
configure:9358: $? = 0
configure:9360: result: yes
configure:9400: checking for C++11 defaulted functions support
configure:9431: mpicxx -c      conftest.cpp >&5
configure:9431: $? = 0
configure:9433: result: yes
configure:9473: checking for C++11 nullptr support
configure:9504: mpicxx -c      conftest.cpp >&5
configure:9504: $? = 0
configure:9506: result: yes
configure:9546: checking for C++11 'final' keyword support
configure:9581: mpicxx -c      conftest.cpp >&5
configure:9581: $? = 0
configure:9613: mpicxx -c      conftest.cpp >&5
conftest.cpp:31:20: error: 'void A::bar()' marked 'final', but is not virtual
               void bar() final;
                    ^~~
configure:9613: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| /* end confdefs.h.  */
| 
|             struct A
|             {
|               // Error: non-virtual function cannot be final
|               void bar() final;
|             };
| 
| int
| main ()
| {
| 
| 
|   ;
|   return 0;
| }
configure:9651: mpicxx -c      conftest.cpp >&5
conftest.cpp:35:20: error: virtual function 'virtual void B::foo()'
               void foo();
                    ^~~
conftest.cpp:30:28: error: overriding final function 'virtual void A::foo()'
               virtual void foo() final;
                            ^~~
configure:9651: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| /* end confdefs.h.  */
| 
|             struct A
|             {
|               virtual void foo() final;
|             };
|             struct B : A
|             {
|               // Error: foo cannot be overridden as it's final in A
|               void foo();
|             };
| 
| int
| main ()
| {
| 
| 
|   ;
|   return 0;
| }
configure:9693: mpicxx -c      conftest.cpp >&5
conftest.cpp:38:20: error: cannot derive from 'final' base 'B' in derived type 'C'
             struct C : B
                    ^
configure:9693: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| /* end confdefs.h.  */
| 
|             struct A
|             {
|             };
| 
|             // struct B is final
|             struct B final : A
|             {
|             };
| 
|             // Error: B is final
|             struct C : B
|             {
|             };
| 
| int
| main ()
| {
| 
| 
|   ;
|   return 0;
| }
configure:9710: result: yes
configure:9746: checking for C++11 decltype support
configure:9777: mpicxx -c      conftest.cpp >&5
configure:9777: $? = 0
configure:9779: result: yes
configure:9819: checking for C++11 std::begin/end support for arrays
configure:9848: mpicxx -c      conftest.cpp >&5
configure:9848: $? = 0
configure:9850: result: yes
configure:9881: checking for C++11 rvalue references support
configure:9910: mpicxx -c      conftest.cpp >&5
configure:9910: $? = 0
configure:9912: result: yes
configure:9948: checking for C++11 constexpr support
configure:9976: mpicxx -c      conftest.cpp >&5
configure:9976: $? = 0
configure:9978: result: yes
configure:10014: checking for C++11 alias declarations support
configure:10049: mpicxx -c      conftest.cpp >&5
configure:10049: $? = 0
configure:10051: result: yes
configure:10120: checking for C++11 std::shared_ptr support with dbg flags
configure:10141: mpicxx -c   -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual    -DDEBUG -D_GLIBCXX_DEBUG -D_GLIBCXX_DEBUG_PEDANTIC      conftest.cpp >&5
configure:10141: $? = 0
configure:10144: result: yes
configure:10120: checking for C++11 std::shared_ptr support with devel flags
configure:10141: mpicxx -c   -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization          conftest.cpp >&5
configure:10141: $? = 0
configure:10144: result: yes
configure:10120: checking for C++11 std::shared_ptr support with opt flags
configure:10141: mpicxx -c   -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization    -DNDEBUG      conftest.cpp >&5
configure:10141: $? = 0
configure:10144: result: yes
configure:10190: checking for C++14 std::make_unique support
configure:10221: mpicxx -c      conftest.cpp >&5
configure:10221: $? = 0
configure:10223: result: yes
configure:10259: checking for C++11 std::regex support
configure:10294: mpicxx -o conftest       conftest.cpp  >&5
configure:10294: $? = 0
configure:10294: ./conftest
configure:10294: $? = 0
configure:10296: result: yes
configure:10335: checking for C++11 variadic template support
configure:10372: mpicxx -c      conftest.cpp >&5
configure:10372: $? = 0
configure:10374: result: yes
configure:10410: checking for C++11 <thread> support
configure:10453: mpicxx -c      conftest.cpp >&5
configure:10453: $? = 0
configure:10455: result: yes
configure:10491: checking for C++11 <condition_variable> support
configure:10545: mpicxx -c      conftest.cpp >&5
configure:10545: $? = 0
configure:10547: result: yes
configure:10594: checking for C++11 <type_traits> support
configure:10730: mpicxx -c      conftest.cpp >&5
configure:10730: $? = 0
configure:10732: result: yes
configure:10785: checking for C++11 std::asinh support in <cmath>
configure:10802: mpicxx -c      conftest.cpp >&5
configure:10802: $? = 0
configure:10804: result: yes
configure:10820: checking for C++11 std::acosh support in <cmath>
configure:10837: mpicxx -c      conftest.cpp >&5
configure:10837: $? = 0
configure:10839: result: yes
configure:10855: checking for C++11 std::atanh support in <cmath>
configure:10872: mpicxx -c      conftest.cpp >&5
configure:10872: $? = 0
configure:10874: result: yes
configure:10891: checking for C++11 std::asinh(complex) support in <complex>
configure:10909: mpicxx -c      conftest.cpp >&5
configure:10909: $? = 0
configure:10911: result: yes
configure:10927: checking for C++11 std::acosh(complex) support in <complex>
configure:10945: mpicxx -c      conftest.cpp >&5
configure:10945: $? = 0
configure:10947: result: yes
configure:10963: checking for C++11 std::atanh(complex) support in <complex>
configure:10981: mpicxx -c      conftest.cpp >&5
configure:10981: $? = 0
configure:10983: result: yes
configure:10999: checking for C++11 std::erf support in <cmath>
configure:11016: mpicxx -c      conftest.cpp >&5
configure:11016: $? = 0
configure:11018: result: yes
configure:11105: checking for C++11 std::to_string() support
configure:11141: mpicxx -c      conftest.cpp >&5
configure:11141: $? = 0
configure:11143: result: yes
configure:11194: checking for C++17 fallthrough attribute support
configure:11222: mpicxx -c  -Werror -Wall -Wextra -pedantic  conftest.cpp >&5
configure:11222: $? = 0
configure:11226: result: yes
configure:11381: checking how to print strings
configure:11408: result: printf
configure:11429: checking for a sed that does not truncate output
configure:11493: result: /bin/sed
configure:11511: checking for grep that handles long lines and -e
configure:11569: result: /bin/grep
configure:11574: checking for egrep
configure:11636: result: /bin/grep -E
configure:11641: checking for fgrep
configure:11703: result: /bin/grep -F
configure:11738: checking for ld used by mpicc
configure:11805: result: /usr/bin/x86_64-linux-gnu-ld
configure:11812: checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld
configure:11827: result: yes
configure:11839: checking for BSD- or MS-compatible name lister (nm)
configure:11893: result: /usr/bin/nm -B
configure:12023: checking the name lister (/usr/bin/nm -B) interface
configure:12030: mpicxx -c   conftest.cpp >&5
configure:12033: /usr/bin/nm -B "conftest.o"
configure:12036: output
0000000000000000 B some_variable
configure:12043: result: BSD nm
configure:12046: checking whether ln -s works
configure:12050: result: yes
configure:12058: checking the maximum length of command line arguments
configure:12189: result: 1572864
configure:12237: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:12277: result: func_convert_file_noop
configure:12284: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:12304: result: func_convert_file_noop
configure:12311: checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files
configure:12318: result: -r
configure:12392: checking for objdump
configure:12408: found /usr/bin/objdump
configure:12419: result: objdump
configure:12451: checking how to recognize dependent libraries
configure:12651: result: pass_all
configure:12736: checking for dlltool
configure:12766: result: no
configure:12796: checking how to associate runtime and link libraries
configure:12823: result: printf %s\n
configure:12883: checking for ar
configure:12899: found /usr/bin/ar
configure:12910: result: ar
configure:12947: checking for archiver @FILE support
configure:12964: mpicxx -c   conftest.cpp >&5
configure:12964: $? = 0
configure:12967: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:12970: $? = 0
configure:12975: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
ar: conftest.o: No such file or directory
configure:12978: $? = 1
configure:12990: result: @
configure:13048: checking for strip
configure:13064: found /usr/bin/strip
configure:13075: result: strip
configure:13147: checking for ranlib
configure:13163: found /usr/bin/ranlib
configure:13174: result: ranlib
configure:13276: checking command to parse /usr/bin/nm -B output from mpicc object
configure:13429: mpicxx -c   conftest.cpp >&5
configure:13432: $? = 0
configure:13436: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:13439: $? = 0
configure:13505: mpicxx -o conftest    conftest.cpp conftstm.o >&5
configure:13508: $? = 0
configure:13546: result: ok
configure:13593: checking for sysroot
configure:13623: result: no
configure:13630: checking for a working dd
configure:13668: result: /bin/dd
configure:13672: checking how to truncate binary pipes
configure:13687: result: /bin/dd bs=4096 count=1
configure:13823: mpicxx -c   conftest.cpp >&5
configure:13826: $? = 0
configure:14016: checking for mt
configure:14032: found /bin/mt
configure:14043: result: mt
configure:14066: checking if mt is a manifest tool
configure:14072: mt '-?'
configure:14080: result: no
configure:14757: checking how to run the C preprocessor
configure:14788: mpicc -E  conftest.c
configure:14788: $? = 0
configure:14802: mpicc -E  conftest.c
conftest.c:48:10: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
          ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:14802: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:14827: result: mpicc -E
configure:14847: mpicc -E  conftest.c
configure:14847: $? = 0
configure:14861: mpicc -E  conftest.c
conftest.c:48:10: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
          ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:14861: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:14890: checking for ANSI C header files
configure:14910: mpicc -c   conftest.c >&5
configure:14910: $? = 0
configure:14983: mpicc -o conftest    conftest.c  >&5
configure:14983: $? = 0
configure:14983: ./conftest
configure:14983: $? = 0
configure:14994: result: yes
configure:15007: checking for sys/types.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for sys/stat.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for stdlib.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for string.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for memory.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for strings.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for inttypes.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for stdint.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15007: checking for unistd.h
configure:15007: mpicc -c   conftest.c >&5
configure:15007: $? = 0
configure:15007: result: yes
configure:15021: checking for dlfcn.h
configure:15021: mpicc -c   conftest.c >&5
configure:15021: $? = 0
configure:15021: result: yes
configure:15287: checking for objdir
configure:15302: result: .libs
configure:15566: checking if mpicc supports -fno-rtti -fno-exceptions
configure:15584: mpicc -c   -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:15588: $? = 0
configure:15601: result: no
configure:15959: checking for mpicc option to produce PIC
configure:15966: result: -fPIC -DPIC
configure:15974: checking if mpicc PIC flag -fPIC -DPIC works
configure:15992: mpicc -c   -fPIC -DPIC -DPIC conftest.c >&5
configure:15996: $? = 0
configure:16009: result: yes
configure:16038: checking if mpicc static flag -static works
configure:16066: result: no
configure:16081: checking if mpicc supports -c -o file.o
configure:16102: mpicc -c   -o out/conftest2.o conftest.c >&5
configure:16106: $? = 0
configure:16128: result: yes
configure:16136: checking if mpicc supports -c -o file.o
configure:16183: result: yes
configure:16216: checking whether the mpicc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries
configure:17475: result: yes
configure:17512: checking whether -lc should be explicitly linked in
configure:17520: mpicc -c   conftest.c >&5
configure:17523: $? = 0
configure:17538: mpicc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:17541: $? = 0
configure:17555: result: no
configure:17715: checking dynamic linker characteristics
configure:18296: mpicc -o conftest    -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:18296: $? = 0
configure:18533: result: GNU/Linux ld.so
configure:18655: checking how to hardcode library paths into programs
configure:18680: result: immediate
configure:19228: checking whether stripping libraries is possible
configure:19233: result: yes
configure:19268: checking if libtool supports shared libraries
configure:19270: result: yes
configure:19273: checking whether to build shared libraries
configure:19298: result: yes
configure:19301: checking whether to build static libraries
configure:19305: result: no
configure:19328: checking how to run the C++ preprocessor
configure:19355: mpicxx -E  conftest.cpp
configure:19355: $? = 0
configure:19369: mpicxx -E  conftest.cpp
conftest.cpp:60:10: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
          ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:19369: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:19394: result: mpicxx -E
configure:19414: mpicxx -E  conftest.cpp
configure:19414: $? = 0
configure:19428: mpicxx -E  conftest.cpp
conftest.cpp:60:10: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
          ^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:19428: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:19590: checking for ld used by mpicxx
configure:19657: result: /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64
configure:19664: checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld
configure:19679: result: yes
configure:19734: checking whether the mpicxx linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries
configure:20807: result: yes
configure:20843: mpicxx -c   conftest.cpp >&5
configure:20846: $? = 0
configure:21327: checking for mpicxx option to produce PIC
configure:21334: result: -fPIC -DPIC
configure:21342: checking if mpicxx PIC flag -fPIC -DPIC works
configure:21360: mpicxx -c   -fPIC -DPIC -DPIC conftest.cpp >&5
configure:21364: $? = 0
configure:21377: result: yes
configure:21400: checking if mpicxx static flag -static works
configure:21428: result: no
configure:21440: checking if mpicxx supports -c -o file.o
configure:21461: mpicxx -c   -o out/conftest2.o conftest.cpp >&5
configure:21465: $? = 0
configure:21487: result: yes
configure:21492: checking if mpicxx supports -c -o file.o
configure:21539: result: yes
configure:21569: checking whether the mpicxx linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries
configure:21609: result: yes
configure:21750: checking dynamic linker characteristics
configure:22495: result: GNU/Linux ld.so
configure:22560: checking how to hardcode library paths into programs
configure:22585: result: immediate
configure:22726: checking if libtool supports shared libraries
configure:22728: result: yes
configure:22731: checking whether to build shared libraries
configure:22755: result: yes
configure:22758: checking whether to build static libraries
configure:22762: result: no
configure:23114: checking for mpif77 option to produce PIC
configure:23121: result: -fPIC
configure:23129: checking if mpif77 PIC flag -fPIC works
configure:23147: mpif77 -c -g -O2 -fPIC conftest.f >&5
configure:23151: $? = 0
configure:23164: result: yes
configure:23187: checking if mpif77 static flag -static works
configure:23215: result: no
configure:23227: checking if mpif77 supports -c -o file.o
configure:23248: mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:23252: $? = 0
configure:23274: result: yes
configure:23279: checking if mpif77 supports -c -o file.o
configure:23326: result: yes
configure:23356: checking whether the mpif77 linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries
configure:24565: result: yes
configure:24706: checking dynamic linker characteristics
configure:25445: result: GNU/Linux ld.so
configure:25510: checking how to hardcode library paths into programs
configure:25535: result: immediate
configure:25672: checking if libtool supports shared libraries
configure:25674: result: yes
configure:25677: checking whether to build shared libraries
configure:25701: result: yes
configure:25704: checking whether to build static libraries
configure:25708: result: no
configure:25742: mpif90 -c -g -O2  conftest.f >&5
configure:25745: $? = 0
configure:26205: checking for mpif90 option to produce PIC
configure:26212: result: -fPIC
configure:26220: checking if mpif90 PIC flag -fPIC works
configure:26238: mpif90 -c -g -O2 -fPIC  conftest.f >&5
configure:26242: $? = 0
configure:26255: result: yes
configure:26278: checking if mpif90 static flag -static works
configure:26306: result: no
configure:26318: checking if mpif90 supports -c -o file.o
configure:26339: mpif90 -c -g -O2 -o out/conftest2.o  conftest.f >&5
configure:26343: $? = 0
configure:26365: result: yes
configure:26370: checking if mpif90 supports -c -o file.o
configure:26417: result: yes
configure:26447: checking whether the mpif90 linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries
configure:27656: result: yes
configure:27797: checking dynamic linker characteristics
configure:28536: result: GNU/Linux ld.so
configure:28601: checking how to hardcode library paths into programs
configure:28626: result: immediate
configure:28714: checking Major version
configure:28716: result: 1
configure:28718: checking Minor version
configure:28720: result: 4
configure:28722: checking Point version
configure:28724: result: 0
configure:28769: checking whether ln -s works
configure:28773: result: yes
configure:28798: checking for a sed that does not truncate output
configure:28862: result: /bin/sed
configure:28882: checking for pkg-config
configure:28900: found /usr/bin/pkg-config
configure:28913: result: /usr/bin/pkg-config
configure:28927: checking whether the compiler implements namespaces
configure:28950: mpicxx -c   conftest.cpp >&5
configure:28950: $? = 0
configure:28964: result: yes
configure:28973: result: ---------------------------------------------
configure:28975: result: ------- Configuring compiler features -------
configure:28977: result: ---------------------------------------------
configure:29075: result: <<< Default floating point is double precision (double) >>>
configure:29114: checking for C/C++ restrict keyword
configure:29139: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29139: $? = 0
configure:29147: result: __restrict
configure:29177: checking pwd.h usability
configure:29177: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29177: $? = 0
configure:29177: result: yes
configure:29177: checking pwd.h presence
configure:29177: mpicxx -E  conftest.cpp
configure:29177: $? = 0
configure:29177: result: yes
configure:29177: checking for pwd.h
configure:29177: result: yes
configure:29215: result: <<< Configuring library with getpwuid >>>
configure:29239: result: <<< Configuring library with exception throwing support >>>
configure:29265: result: <<< Configuring library with compile timestamps >>>
configure:29280: checking size of short int
configure:29285: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29285: $? = 0
configure:29285: ./conftest
configure:29285: $? = 0
configure:29299: result: 2
configure:29313: checking size of int
configure:29318: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29318: $? = 0
configure:29318: ./conftest
configure:29318: $? = 0
configure:29332: result: 4
configure:29346: checking size of unsigned int
configure:29351: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29351: $? = 0
configure:29351: ./conftest
configure:29351: $? = 0
configure:29365: result: 4
configure:29379: checking size of size_t
configure:29384: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29384: $? = 0
configure:29384: ./conftest
configure:29384: $? = 0
configure:29398: result: 8
configure:29412: checking size of long int
configure:29417: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29417: $? = 0
configure:29417: ./conftest
configure:29417: $? = 0
configure:29431: result: 8
configure:29445: checking size of float
configure:29450: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29450: $? = 0
configure:29450: ./conftest
configure:29450: $? = 0
configure:29464: result: 4
configure:29478: checking size of double
configure:29483: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29483: $? = 0
configure:29483: ./conftest
configure:29483: $? = 0
configure:29497: result: 8
configure:29511: checking size of void *
configure:29516: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29516: $? = 0
configure:29516: ./conftest
configure:29516: $? = 0
configure:29530: result: 8
configure:29549: checking size of function_pointer
configure:29554: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
configure:29554: $? = 0
configure:29554: ./conftest
configure:29554: $? = 0
configure:29569: result: 8
configure:29584: checking whether the compiler supports Run-Time Type Identification
configure:29619: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29619: $? = 0
configure:29633: result: yes
configure:29649: checking getopt.h usability
configure:29649: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29649: $? = 0
configure:29649: result: yes
configure:29649: checking getopt.h presence
configure:29649: mpicxx -E  conftest.cpp
configure:29649: $? = 0
configure:29649: result: yes
configure:29649: checking for getopt.h
configure:29649: result: yes
configure:29661: checking csignal usability
configure:29661: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29661: $? = 0
configure:29661: result: yes
configure:29661: checking csignal presence
configure:29661: mpicxx -E  conftest.cpp
configure:29661: $? = 0
configure:29661: result: yes
configure:29661: checking for csignal
configure:29661: result: yes
configure:29673: checking sys/resource.h usability
configure:29673: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29673: $? = 0
configure:29673: result: yes
configure:29673: checking sys/resource.h presence
configure:29673: mpicxx -E  conftest.cpp
configure:29673: $? = 0
configure:29673: result: yes
configure:29673: checking for sys/resource.h
configure:29673: result: yes
configure:29683: checking whether the compiler has locale
configure:29715: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29715: $? = 0
configure:29729: result: yes
configure:29737: checking whether the compiler has stringstream
configure:29770: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29770: $? = 0
configure:29784: result: yes
configure:29864: checking fenv.h usability
configure:29864: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29864: $? = 0
configure:29864: result: yes
configure:29864: checking fenv.h presence
configure:29864: mpicxx -E  conftest.cpp
configure:29864: $? = 0
configure:29864: result: yes
configure:29864: checking for fenv.h
configure:29864: result: yes
configure:29876: checking xmmintrin.h usability
configure:29876: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29876: $? = 0
configure:29876: result: yes
configure:29876: checking xmmintrin.h presence
configure:29876: mpicxx -E  conftest.cpp
configure:29876: $? = 0
configure:29876: result: yes
configure:29876: checking for xmmintrin.h
configure:29876: result: yes
configure:29900: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29900: $? = 0
configure:29924: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29924: $? = 0
configure:29939: checking whether sigaction is declared
configure:29939: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29939: $? = 0
configure:29939: result: yes
configure:29953: checking for mkdir with two arguments
configure:29969: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:29969: $? = 0
configure:29973: result: yes
configure:29982: checking direct.h usability
configure:29982: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
conftest.cpp:130:10: fatal error: direct.h: No such file or directory
 #include <direct.h>
          ^~~~~~~~~~
compilation terminated.
configure:29982: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <direct.h>
configure:29982: result: no
configure:29982: checking direct.h presence
configure:29982: mpicxx -E  conftest.cpp
conftest.cpp:97:10: fatal error: direct.h: No such file or directory
 #include <direct.h>
          ^~~~~~~~~~
compilation terminated.
configure:29982: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| /* end confdefs.h.  */
| #include <direct.h>
configure:29982: result: no
configure:29982: checking for direct.h
configure:29982: result: no
configure:29992: checking whether _mkdir is declared
configure:29992: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
conftest.cpp:98:14: fatal error: direct.h: No such file or directory
     #include <direct.h>
              ^~~~~~~~~~
compilation terminated.
configure:29992: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| /* end confdefs.h.  */
| 
|     #include <direct.h>
| 
| 
| int
| main ()
| {
| #ifndef _mkdir
| #ifdef __cplusplus
|   (void) _mkdir;
| #else
|   (void) _mkdir;
| #endif
| #endif
| 
|   ;
|   return 0;
| }
configure:29992: result: no
configure:30010: checking sys/utsname.h usability
configure:30010: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30010: $? = 0
configure:30010: result: yes
configure:30010: checking sys/utsname.h presence
configure:30010: mpicxx -E  conftest.cpp
configure:30010: $? = 0
configure:30010: result: yes
configure:30010: checking for sys/utsname.h
configure:30010: result: yes
configure:30046: checking whether the compiler supports std::unordered_multimap
configure:30074: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30074: $? = 0
configure:30088: result: yes
configure:30109: checking whether the compiler supports std::unordered_map
configure:30135: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30135: $? = 0
configure:30149: result: yes
configure:30170: checking whether the compiler supports std::unordered_multiset
configure:30198: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30198: $? = 0
configure:30212: result: yes
configure:30233: checking whether the compiler supports std::unordered_set
configure:30260: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30260: $? = 0
configure:30274: result: yes
configure:30297: checking whether the compiler supports std::hash
configure:30328: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:120:15: warning: unused variable 'hashed' [-Wunused-variable]
   std::size_t hashed = m(12345);
               ^~~~~~
conftest.cpp:122:15: warning: unused variable 'hashed2' [-Wunused-variable]
   std::size_t hashed2 = m2(std::string("foo"));
               ^~~~~~~
configure:30328: $? = 0
configure:30342: result: yes
configure:30376: checking for library containing dlopen
configure:30407: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp  >&5
/tmp/ccSWvS4z.o: In function `main':
/mnt/x/libmesh/libmesh/conftest.cpp:127: undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:30407: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char dlopen ();
| int
| main ()
| {
| return dlopen ();
|   ;
|   return 0;
| }
configure:30407: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp -ldl   >&5
configure:30407: $? = 0
configure:30424: result: -ldl
configure:30441: checking whether the c++ compiler supports dlopen/dlsym/dlclose
configure:30496: mpicxx -o conftest  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization      conftest.cpp -ldl  >&5
configure:30496: $? = 0
configure:30498: result: yes
configure:30528: checking whether the compiler supports GCC C++ ABI name demangling
configure:30563: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30563: $? = 0
configure:30577: result: yes
configure:30585: checking whether the c++ compiler supports glibc backtrace
configure:30611: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:124:8: warning: unused variable 'strings' [-Wunused-variable]
 char** strings = backtrace_symbols(addresses, size);
        ^~~~~~~
configure:30611: $? = 0
configure:30625: result: yes
configure:30646: checking if errno.h can be wrapped in namespace
configure:30666: mpicxx -c  -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization     conftest.cpp >&5
configure:30666: $? = 0
configure:30668: result: yes
configure:30746: result: ---------------------------------------------
configure:30748: result: ----- Done configuring compiler features ----
configure:30750: result: ---------------------------------------------
configure:30897: result: ---------------------------------------------
configure:30899: result: ----- Configuring core library features -----
configure:30901: result: ---------------------------------------------
configure:30925: result: configuring gdb command... "gdb"
configure:30980: result: <<< Configuring library with warnings >>>
configure:31011: result: <<< Configuring library with deprecated code support >>>
configure:31046: result: <<< Configuring library with forward declared enumerations >>>
configure:31100: result: <<< Configuring library to require ``include "libmesh/etc.h"'' style >>>
configure:31126: result: <<< Configuring library to keep names in libMesh namespace >>>
configure:31177: result: configuring size of boundary_id... 2
configure:31223: result: configuring size of dof_id... 4
configure:31269: result: configuring size of processor_id... 2
configure:31315: result: configuring size of subdomain_id... 2
configure:31462: result: <<< Configuring library with AMR support >>>
configure:31486: result: <<< Configuring library with variational smoother support >>>
configure:31510: result: <<< Configuring library with periodic BC support >>>
configure:31534: result: <<< Configuring library with Dirichlet constraint support >>>
configure:31606: result: <<< Configuring library to use ghosted local vectors >>>
configure:31631: result: <<< Configuring library to store node valence >>>
configure:31695: result: <<< Configuring library with higher order p-FEM shapes >>>
configure:31753: result: <<< Configuring library with second derivatives >>>
configure:31792: result: <<< Configuring library with real number support >>>
configure:31825: result: <<< Configuring library with reference counting support >>>
configure:31879: result: <<< Configuring library example suite support >>>
configure:31892: result: ---------------------------------------------
configure:31894: result: -- Done configuring core library features ---
configure:31896: result: ---------------------------------------------
configure:31960: result: ---------------------------------------------
configure:31962: result: ----- Configuring for optional packages -----
configure:31964: result: ---------------------------------------------
configure:32029: checking for built-in XDR support
configure:32049: mpicxx -o conftest    conftest.cpp -ldl  >&5
configure:32049: $? = 0
configure:32051: result: yes
configure:32210: checking for boostlib >= 1.57.0
configure:32281: mpicxx -c   -I/usr/include/ conftest.cpp >&5
configure:32281: $? = 0
configure:32283: result: yes
configure:32421: result: <<< Using external boost installation >>>
configure:32758: checking for boost::movelib::unique_ptr support
configure:32785: mpicxx -c  -I/usr/include/  conftest.cpp >&5
configure:32785: $? = 0
configure:32788: result: yes
configure:32904: checking for petscarch
configure:32937: result: no
configure:32968: checking /include/petscversion.h usability
configure:32968: mpicc -c   conftest.c >&5
conftest.c:178:10: fatal error: /include/petscversion.h: No such file or directory
 #include </include/petscversion.h>
          ^~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:32968: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </include/petscversion.h>
configure:32968: result: no
configure:32968: checking /include/petscversion.h presence
configure:32968: mpicc -E  conftest.c
conftest.c:145:10: fatal error: /include/petscversion.h: No such file or directory
 #include </include/petscversion.h>
          ^~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:32968: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| /* end confdefs.h.  */
| #include </include/petscversion.h>
configure:32968: result: no
configure:32968: checking for /include/petscversion.h
configure:32968: result: no
configure:34259: result: <<< PETSc disabled.  Will try configuring MPI now... >>>
configure:34742: mpicxx -o conftest    conftest.cpp -ldl  >&5
configure:34742: $? = 0
configure:34745: result: mpicxx Compiler Supports MPI 
configure:35723: checking Whether MPI is available for Trilinos
configure:35733: result: yes
configure:35738: checking Whether Real precision is compatible with Trilinos
configure:35748: result: yes
configure:36225: result: <<< Configuring library with Nox support >>>
configure:36329: result: <<< Configuring library with DTK support >>>
configure:36479: result: <<< User requested thread model: auto >>>
configure:36484: checking for OpenMP flag of C++ compiler
configure:36529: mpicxx -o conftest  -fopenmp   conftest.cpp -ldl  >&5
configure:36529: $? = 0
configure:36539: result: -fopenmp
configure:36556: result: <<< Configuring library with OpenMP support >>>
configure:36774: checking for the pthreads library -lpthreads
configure:36812: mpicc -o conftest     conftest.c -lpthreads -ldl  >&5
/usr/bin/x86_64-linux-gnu-ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
configure:36812: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:36821: result: no
configure:36719: checking whether pthreads work without any flags
configure:36812: mpicc -o conftest     conftest.c  -ldl  >&5
configure:36812: $? = 0
configure:36821: result: yes
configure:36840: checking for joinable pthread attribute
configure:36855: mpicc -o conftest     conftest.c  -ldl  >&5
configure:36855: $? = 0
configure:36861: result: PTHREAD_CREATE_JOINABLE
configure:36871: checking if more special flags are required for pthreads
configure:36885: result: no
configure:36891: checking for PTHREAD_PRIO_INHERIT
configure:36909: mpicc -o conftest     conftest.c  -ldl  >&5
configure:36909: $? = 0
configure:36918: result: yes
configure:37022: result: <<< Configuring library with pthread support >>>
configure:37271: result: <<< Found thread model: pthread >>>
configure:37283: result: <<< Laspack support is disabled, configure with --disable-strict-lgpl to enable it >>>
configure:37352: result: <<< The space filling curves partitioner is disabled, configure with --disable-strict-lgpl to enable it >>>
configure:37438: checking zlib.h usability
configure:37438: mpicxx -c   conftest.cpp >&5
configure:37438: $? = 0
configure:37438: result: yes
configure:37438: checking zlib.h presence
configure:37438: mpicxx -E  conftest.cpp
configure:37438: $? = 0
configure:37438: result: yes
configure:37438: checking for zlib.h
configure:37438: result: yes
configure:37448: checking for gzopen in -lz
configure:37473: mpicxx -o conftest    conftest.cpp -lz  -ldl  >&5
configure:37473: $? = 0
configure:37482: result: yes
configure:37502: result: <<< Configuring library with gzstreams support >>>
configure:37551: checking for bzip2
configure:37567: found /bin/bzip2
configure:37579: result: bzip2
configure:37591: checking for bunzip2
configure:37607: found /bin/bunzip2
configure:37619: result: bunzip2
configure:37629: result: <<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>>
configure:37658: checking for xz
configure:37674: found /usr/bin/xz
configure:37686: result: xz
configure:37696: result: <<< Using xz for writing/reading compressed .xz files >>>
configure:37750: result: <<< Testing X11 headers with -I/usr/include >>>
configure:37757: checking X11/Intrinsic.h usability
configure:37757: mpicxx -c  -I/usr/include  conftest.cpp >&5
configure:37757: $? = 0
configure:37757: result: yes
configure:37757: checking X11/Intrinsic.h presence
configure:37757: mpicxx -E -I/usr/include  conftest.cpp
configure:37757: $? = 0
configure:37757: result: yes
configure:37757: checking for X11/Intrinsic.h
configure:37757: result: yes
configure:37779: checking size of void *
configure:37798: result: 8
configure:37825: result: <<< Configuring library with Tecplot TecIO support >>>
configure:38076: result: <<< Configuring library with Metis support >>>
configure:38080: checking for thread local storage (TLS) class
configure:38107: mpicxx -c   conftest.cpp >&5
configure:38107: $? = 0
configure:38127: result: __thread
configure:38201: result: <<< Configuring library with Parmetis support >>>
configure:38237: checking for doxygen
configure:38270: result: no
configure:38339: result: <<< Tetgen support is disabled, configure with --disable-strict-lgpl to enable it >>>
configure:38407: result: <<< Triangle meshing support is disabled, configure with --disable-strict-lgpl to enable it >>>
configure:38494: checking for library containing sqrt
configure:38525: mpicxx -o conftest    conftest.cpp -ldl  >&5
conftest.cpp:169:6: warning: declaration of 'char sqrt()' conflicts with built-in declaration 'double sqrt(double)' [-Wbuiltin-declaration-mismatch]
 char sqrt ();
      ^~~~
configure:38525: $? = 0
configure:38542: result: none required
configure:38550: checking for library containing trunc
configure:38581: mpicxx -o conftest    conftest.cpp -ldl  >&5
conftest.cpp:169:6: warning: declaration of 'char trunc()' conflicts with built-in declaration 'double trunc(double)' [-Wbuiltin-declaration-mismatch]
 char trunc ();
      ^~~~~
configure:38581: $? = 0
configure:38598: result: none required
configure:38606: checking for library containing cos
configure:38637: mpicxx -o conftest    conftest.cpp -ldl  >&5
conftest.cpp:169:6: warning: declaration of 'char cos()' conflicts with built-in declaration 'double cos(double)' [-Wbuiltin-declaration-mismatch]
 char cos ();
      ^~~
configure:38637: $? = 0
configure:38654: result: none required
configure:38667: result: <<< Configuring library with Qhull version 2012.1 support >>>
configure:38717: result: <<< Configuring library with GMV support >>>
configure:38852: checking /vtkConfigure.h usability
configure:38852: mpicxx -c   conftest.cpp >&5
conftest.cpp:197:10: fatal error: /vtkConfigure.h: No such file or directory
 #include </vtkConfigure.h>
          ^~~~~~~~~~~~~~~~~
compilation terminated.
configure:38852: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </vtkConfigure.h>
configure:38852: result: no
configure:38852: checking /vtkConfigure.h presence
configure:38852: mpicxx -E  conftest.cpp
conftest.cpp:164:10: fatal error: /vtkConfigure.h: No such file or directory
 #include </vtkConfigure.h>
          ^~~~~~~~~~~~~~~~~
compilation terminated.
configure:38852: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| /* end confdefs.h.  */
| #include </vtkConfigure.h>
configure:38852: result: no
configure:38852: checking for /vtkConfigure.h
configure:38852: result: no
configure:38865: result: VTK header files not found!
configure:39128: result: <<< Configuring library without VTK support >>>
configure:39232: checking /usr/include/Eigen/Eigen usability
configure:39232: mpicxx -c   conftest.cpp >&5
conftest.cpp:197:10: fatal error: /usr/include/Eigen/Eigen: No such file or directory
 #include </usr/include/Eigen/Eigen>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:39232: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </usr/include/Eigen/Eigen>
configure:39232: result: no
configure:39232: checking /usr/include/Eigen/Eigen presence
configure:39232: mpicxx -E  conftest.cpp
conftest.cpp:164:10: fatal error: /usr/include/Eigen/Eigen: No such file or directory
 #include </usr/include/Eigen/Eigen>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:39232: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| /* end confdefs.h.  */
| #include </usr/include/Eigen/Eigen>
configure:39232: result: no
configure:39232: checking for /usr/include/Eigen/Eigen
configure:39232: result: no
configure:39285: result: <<< external Eigen header files not found, using Eigen from ./contrib >>>
configure:39304: checking Eigen/Dense usability
configure:39304: mpicxx -c  -I./contrib/eigen/eigen  conftest.cpp >&5
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from ./contrib/eigen/eigen/Eigen/Dense:1,
                 from conftest.cpp:197:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from ./contrib/eigen/eigen/Eigen/Dense:1,
                 from conftest.cpp:197:
/usr/include/c++/7/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^~~~~~~~~
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from ./contrib/eigen/eigen/Eigen/Dense:1,
                 from conftest.cpp:197:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from ./contrib/eigen/eigen/Eigen/Dense:1,
                 from conftest.cpp:197:
/usr/include/c++/7/backward/binders.h:108:11: note: declared here
     class binder1st
           ^~~~~~~~~
configure:39304: $? = 0
configure:39304: result: yes
configure:39304: checking Eigen/Dense presence
configure:39304: mpicxx -E -I./contrib/eigen/eigen  conftest.cpp
configure:39304: $? = 0
configure:39304: result: yes
configure:39304: checking for Eigen/Dense
configure:39304: result: yes
configure:39320: checking Eigen/Sparse usability
configure:39320: mpicxx -c  -I./contrib/eigen/eigen  conftest.cpp >&5
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from ./contrib/eigen/eigen/Eigen/SparseCore:4,
                 from ./contrib/eigen/eigen/Eigen/Sparse:19,
                 from conftest.cpp:198:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from ./contrib/eigen/eigen/Eigen/SparseCore:4,
                 from ./contrib/eigen/eigen/Eigen/Sparse:19,
                 from conftest.cpp:198:
/usr/include/c++/7/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^~~~~~~~~
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from ./contrib/eigen/eigen/Eigen/SparseCore:4,
                 from ./contrib/eigen/eigen/Eigen/Sparse:19,
                 from conftest.cpp:198:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from ./contrib/eigen/eigen/Eigen/SparseCore:4,
                 from ./contrib/eigen/eigen/Eigen/Sparse:19,
                 from conftest.cpp:198:
/usr/include/c++/7/backward/binders.h:108:11: note: declared here
     class binder1st
           ^~~~~~~~~
configure:39320: $? = 0
configure:39320: result: yes
configure:39320: checking Eigen/Sparse presence
configure:39320: mpicxx -E -I./contrib/eigen/eigen  conftest.cpp
configure:39320: $? = 0
configure:39320: result: yes
configure:39320: checking for Eigen/Sparse
configure:39320: result: yes
configure:39352: checking for eigen - version >= 3.1.2
configure:39381: mpicxx -c  -I./contrib/eigen/eigen  conftest.cpp >&5
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from conftest.cpp:167:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from conftest.cpp:167:
/usr/include/c++/7/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^~~~~~~~~
In file included from ./contrib/eigen/eigen/Eigen/Core:276:0,
                 from conftest.cpp:167:
./contrib/eigen/eigen/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_function.h:1127:0,
                 from /usr/include/c++/7/string:48,
                 from /usr/include/c++/7/bits/locale_classes.h:40,
                 from /usr/include/c++/7/bits/ios_base.h:41,
                 from /usr/include/c++/7/ios:42,
                 from /usr/include/c++/7/istream:38,
                 from /usr/include/c++/7/sstream:38,
                 from /usr/include/c++/7/complex:45,
                 from ./contrib/eigen/eigen/Eigen/Core:28,
                 from conftest.cpp:167:
/usr/include/c++/7/backward/binders.h:108:11: note: declared here
     class binder1st
           ^~~~~~~~~
configure:39381: $? = 0
configure:39383: result: yes
configure:39408: result: <<< Configuring library with Eigen support >>>
configure:39540: checking /usr/include/glpk.h usability
configure:39540: mpicxx -c   conftest.cpp >&5
conftest.cpp:200:10: fatal error: /usr/include/glpk.h: No such file or directory
 #include </usr/include/glpk.h>
          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:39540: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| #define HAVE_EIGEN_DENSE 1
| #define HAVE_EIGEN_SPARSE 1
| #define HAVE_EIGEN 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </usr/include/glpk.h>
configure:39540: result: no
configure:39540: checking /usr/include/glpk.h presence
configure:39540: mpicxx -E  conftest.cpp
conftest.cpp:167:10: fatal error: /usr/include/glpk.h: No such file or directory
 #include </usr/include/glpk.h>
          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
configure:39540: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| #define HAVE_EIGEN_DENSE 1
| #define HAVE_EIGEN_SPARSE 1
| #define HAVE_EIGEN 1
| /* end confdefs.h.  */
| #include </usr/include/glpk.h>
configure:39540: result: no
configure:39540: checking for /usr/include/glpk.h
configure:39540: result: no
configure:39553: result: GLPK header files not found!
configure:39728: checking for valid nlopt installation
configure:39810: mpicc -o conftest  -I   conftest.c -ldl  -L -lnlopt -lm >&5
/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/Scrt1.o: In function `_start':
(.text+0x20): undefined reference to `main'
collect2: error: ld returned 1 exit status
configure:39810: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "1.4.0-pre"
| #define PACKAGE_STRING "libmesh 1.4.0-pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.github.io"
| #define CONFIGURE_INFO "./configure "
| #define PACKAGE "libmesh"
| #define VERSION "1.4.0-pre"
| #define HAVE_CXX11 1
| #define HAVE_CXX11_AUTO 1
| #define HAVE_CXX11_RANGEFOR 1
| #define HAVE_CXX11_INITIALIZER_LIST 1
| #define HAVE_CXX11_UNIQUE_PTR 1
| #define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
| #define HAVE_CXX11_TUPLE 1
| #define HAVE_CXX11_LAMBDA 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM 1
| #define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
| #define HAVE_CXX11_OVERRIDE 1
| #define HAVE_CXX11_MOVE_CONSTRUCTORS 1
| #define HAVE_CXX11_DELETED_FUNCTIONS 1
| #define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
| #define HAVE_CXX11_NULLPTR 1
| #define HAVE_CXX11_FINAL 1
| #define HAVE_CXX11_DECLTYPE 1
| #define HAVE_CXX11_RVALUE_REFERENCES 1
| #define HAVE_CXX11_CONSTEXPR 1
| #define HAVE_CXX11_ALIAS_DECLARATIONS 1
| #define HAVE_CXX11_SHARED_PTR 1
| #define HAVE_CXX14_MAKE_UNIQUE 1
| #define HAVE_CXX11_REGEX 1
| #define HAVE_CXX11_VARIADIC_TEMPLATES 1
| #define HAVE_CXX11_THREAD 1
| #define HAVE_CXX11_CONDITION_VARIABLE 1
| #define HAVE_CXX11_TYPE_TRAITS 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
| #define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
| #define HAVE_CXX11_ERF 1
| #define HAVE_CXX11_TO_STRING 1
| #define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 1
| #define MINOR_VERSION 4
| #define MICRO_VERSION 0
| #define LIB_VERSION "1.4.0-pre"
| #define LIB_RELEASE ""
| #define CXX "mpicxx"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_PWD_H 1
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define ENABLE_TIMESTAMPS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_FEENABLEEXCEPT 1
| #define HAVE_FEDISABLEEXCEPT 1
| #define HAVE_DECL_SIGACTION 1
| #define HAVE_MKDIR /**/
| #define HAVE_DECL__MKDIR 0
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_STD_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
| #define HAVE_STD_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::unordered_map
| #define INCLUDE_UNORDERED_MAP <unordered_map>
| #define HAVE_STD_UNORDERED_MULTISET 1
| #define BEST_UNORDERED_MULTISET std::unordered_multiset
| #define INCLUDE_UNORDERED_MULTISET <unordered_set>
| #define HAVE_STD_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::unordered_set
| #define INCLUDE_UNORDERED_SET <unordered_set>
| #define HAVE_STD_HASH 1
| #define BEST_HASH std::hash
| #define INCLUDE_HASH <functional>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLOPEN 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define GDB_COMMAND "gdb"
| #define ENABLE_UNIQUE_PTR 1
| #define ENABLE_WARNINGS 1
| #define ENABLE_DEPRECATED 1
| #define FORWARD_DECLARE_ENUMS 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define UNIQUE_ID_BYTES 8
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_NODE_VALENCE 1
| #define DIM 3
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_XDR 1
| #define HAVE_BOOST 1
| #define HAVE_EXTERNAL_BOOST 1
| #define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
| #define HAVE_MPI 1
| #define TRILINOS_HAVE_NOX 1
| #define TRILINOS_HAVE_DTK 1
| #define HAVE_OPENMP 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define USING_THREADS 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_XZ 1
| #define SIZEOF_VOID_P 8
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define TLS __thread
| #define HAVE_PARMETIS 1
| #define HAVE_QHULL_API 1
| #define HAVE_GMV 1
| #define HAVE_EIGEN_DENSE 1
| #define HAVE_EIGEN_SPARSE 1
| #define HAVE_EIGEN 1
| /* end confdefs.h.  */
| 
| 
| #include <math.h>
| #include <nlopt.h>
| #include <stdio.h>
| 
| double myfunc(unsigned n, const double *x, double *grad, void *my_func_data)
| {
| if (grad) {
|   grad[0] = 0.0;
|   grad[1] = 0.5 / sqrt(x[1]);
|  }
|  return sqrt(x[1]);
| }
| 
| typedef struct
| {
|   double a, b;
| } my_constraint_data;
| 
| double myconstraint(unsigned n, const double *x, double *grad, void *data)
| {
|   my_constraint_data *d = (my_constraint_data *) data;
|   double a = d->a, b = d->b;
|   if (grad) {
|     grad[0] = 3 * a * (a*x[0] + b) * (a*x[0] + b);
|     grad[1] = -1.0;
|   }
|   return ((a*x[0] + b) * (a*x[0] + b) * (a*x[0] + b) - x[1]);
| }
| 
| int
| main ()
| {
| 
| double lb[2] = { -HUGE_VAL, 0 }; /* lower bounds */
| nlopt_opt opt;
| 
| opt = nlopt_create(NLOPT_LD_MMA, 2); /* algorithm and dimensionality */
| nlopt_set_lower_bounds(opt, lb);
| nlopt_set_min_objective(opt, myfunc, NULL);
| 
| my_constraint_data data[2] = { {2,0}, {-1,1} };
| nlopt_add_inequality_constraint(opt, myconstraint, &data[0], 1e-8);
| nlopt_add_inequality_constraint(opt, myconstraint, &data[1], 1e-8);
| nlopt_set_xtol_rel(opt, 1e-4);
| double x[2] = { 1.234, 5.678 };  /* some initial guess */
| double minf; /* the minimum objective value, upon return */
| 
| if (nlopt_optimize(opt, x, &minf) < 0) {
|   printf("nlopt failed!\n");
| }
| else {
|   printf("found minimum at f(%g,%g) = %0.10g\n", x[0], x[1], minf);
| }
| nlopt_destroy(opt);
| return 0;
| 
|   ;
|   return 0;
| }
| 
configure:39819: result: no
configure:39932: result: <<< Required header files not found, Cap'n Proto support disabled. >>>
configure:40493: result: <<< Configuring library with NetCDF version 4 support >>>
configure:40576: result: defining -DNOT_NETCDF4 for our Exodus build
configure:40595: result: <<< Configuring library with Exodus version v5.22 support >>>
configure:40612: result: <<< Configuring library with Exodus Fortran API >>>
configure:40718: result: <<< Configuring library with Nemesis version v5.22 support >>>
configure:40792: result: <<< Configuring library with libHilbert support >>>
configure:40881: checking for a sed that does not truncate output
configure:40945: result: /bin/sed
configure:40954: checking for bison
configure:40984: result: no
configure:40954: checking for byacc
configure:40984: result: no
configure:41013: result: <<< Configuring library with fparser support (release version) >>>
configure:41018: checking for dlopen support
configure:41172: result: yes
configure:41180: result: <<< Configuring library with fparser JIT compilation support >>>
configure:41318: checking for cppunit-config
configure:41349: result: no
configure:41359: checking for Cppunit - version >= 1.10.0
configure:41363: result: no
configure:41549: result: <<< Configuring library with nanoflann KDtree support >>>
configure:41604: result: <<< Configuring library with MetaPhysicL support >>>
configure:41819: result: ----------------------------------------------
configure:41821: result: --- Done configuring for optional packages ---
configure:41823: result: ----------------------------------------------
configure:41837: result: removing duplicate include paths...
configure:41845: result: removing duplicate libraries...
configure:41874: checking for git
configure:41892: found /usr/bin/git
configure:41904: result: /usr/bin/git
configure:42109: checking that generated files are newer than configure
configure:42115: result: done
configure:42510: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by libmesh config.status 1.4.0-pre, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on Shawn-K430

config.status:1898: creating Makefile
config.status:1898: creating include/Makefile
config.status:1898: creating include/libmesh/Makefile
config.status:1898: creating contrib/Makefile
config.status:1898: creating contrib/utils/Makefile
config.status:1898: creating contrib/utils/Make.common
config.status:1898: creating tests/Makefile
config.status:1898: creating contrib/utils/libmesh.pc
config.status:1898: creating contrib/utils/libmesh-opt.pc
config.status:1898: creating contrib/utils/libmesh-dbg.pc
config.status:1898: creating contrib/utils/libmesh-devel.pc
config.status:1898: creating contrib/utils/libmesh-prof.pc
config.status:1898: creating contrib/utils/libmesh-oprof.pc
config.status:1898: creating doc/Doxyfile
config.status:1898: creating doc/Makefile
config.status:1898: creating doc/html/Makefile
config.status:1898: creating contrib/bin/libmesh-config
config.status:1898: creating contrib/bin/create_libmesh_release
config.status:1898: creating doc/dot
config.status:1898: creating tests/run_unit_tests.sh
config.status:1898: creating contrib/boost/include/Makefile
config.status:1898: creating contrib/laspack/Makefile
config.status:1898: creating contrib/sfcurves/Makefile
config.status:1898: creating contrib/gzstream/Makefile
config.status:1898: creating contrib/tecplot/tecio/Makefile
config.status:1898: creating contrib/tecplot/binary/Makefile
config.status:1898: creating contrib/metis/Makefile
config.status:1898: creating contrib/parmetis/Makefile
config.status:1898: creating contrib/tetgen/Makefile
config.status:1898: creating contrib/triangle/Makefile
config.status:1898: creating contrib/qhull/qhull/Makefile
config.status:1898: creating contrib/gmv/Makefile
config.status:1898: creating contrib/eigen/eigen/Makefile
config.status:1898: creating contrib/capnproto/Makefile
config.status:1898: creating contrib/netcdf/v3/Makefile
config.status:1898: creating contrib/exodusii/v5.09/Makefile
config.status:1898: creating contrib/exodusii/v5.22/exodus/Makefile
config.status:1898: creating contrib/nemesis/v3.09/Makefile
config.status:1898: creating contrib/nemesis/v5.22/nemesis/Makefile
config.status:1898: creating contrib/libHilbert/Makefile
config.status:1898: creating contrib/fparser/Makefile
config.status:1898: creating contrib/fparser/extrasrc/Makefile
config.status:1898: creating contrib/nanoflann/Makefile
config.status:1898: creating examples/introduction/introduction_ex1/Makefile
config.status:1898: creating examples/introduction/introduction_ex2/Makefile
config.status:1898: creating examples/introduction/introduction_ex3/Makefile
config.status:1898: creating examples/introduction/introduction_ex4/Makefile
config.status:1898: creating examples/introduction/introduction_ex5/Makefile
config.status:1898: creating examples/adaptivity/adaptivity_ex1/Makefile
config.status:1898: creating examples/adaptivity/adaptivity_ex2/Makefile
config.status:1898: creating examples/adaptivity/adaptivity_ex3/Makefile
config.status:1898: creating examples/adaptivity/adaptivity_ex4/Makefile
config.status:1898: creating examples/adaptivity/adaptivity_ex5/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex1/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex2/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex3/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex4/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex5/Makefile
config.status:1898: creating examples/adjoints/adjoints_ex6/Makefile
config.status:1898: creating examples/eigenproblems/eigenproblems_ex1/Makefile
config.status:1898: creating examples/eigenproblems/eigenproblems_ex2/Makefile
config.status:1898: creating examples/eigenproblems/eigenproblems_ex3/Makefile
config.status:1898: creating examples/fem_system/fem_system_ex1/Makefile
config.status:1898: creating examples/fem_system/fem_system_ex2/Makefile
config.status:1898: creating examples/fem_system/fem_system_ex3/Makefile
config.status:1898: creating examples/fem_system/fem_system_ex4/Makefile
config.status:1898: creating examples/solution_transfer/solution_transfer_ex1/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex1/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex2/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex3/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex4/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex5/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex6/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex7/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex8/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex9/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex10/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex11/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex12/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex13/Makefile
config.status:1898: creating examples/miscellaneous/miscellaneous_ex14/Makefile
config.status:1898: creating examples/optimization/optimization_ex1/Makefile
config.status:1898: creating examples/optimization/optimization_ex2/Makefile
config.status:1898: creating examples/subdomains/subdomains_ex1/Makefile
config.status:1898: creating examples/subdomains/subdomains_ex2/Makefile
config.status:1898: creating examples/subdomains/subdomains_ex3/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex1/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex2/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex3/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex4/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex5/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex6/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex7/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex8/Makefile
config.status:1898: creating examples/systems_of_equations/systems_of_equations_ex9/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex1/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex2/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex3/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex4/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex5/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex6/Makefile
config.status:1898: creating examples/reduced_basis/reduced_basis_ex7/Makefile
config.status:1898: creating examples/transient/transient_ex1/Makefile
config.status:1898: creating examples/transient/transient_ex2/Makefile
config.status:1898: creating examples/vector_fe/vector_fe_ex1/Makefile
config.status:1898: creating examples/vector_fe/vector_fe_ex2/Makefile
config.status:1898: creating examples/vector_fe/vector_fe_ex3/Makefile
config.status:1898: creating examples/vector_fe/vector_fe_ex4/Makefile
config.status:1898: creating examples/Makefile
config.status:1898: creating include/libmesh_config.h.tmp
config.status:2127: executing include/libmesh_config.h commands
config.status:2169: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines
config.status:2127: executing depfiles commands
config.status:2127: executing libtool commands
configure:45667: === configuring in contrib/netcdf/v4 (/mnt/x/libmesh/libmesh/contrib/netcdf/v4)
configure:45730: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local'  '--disable-netcdf-4' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= ' 'LIBS= -ldl ' --cache-file=/dev/null --srcdir=.
configure:45667: === configuring in contrib/metaphysicl/0.2.0 (/mnt/x/libmesh/libmesh/contrib/metaphysicl/0.2.0)
configure:45730: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local'  '--disable-netcdf-4' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= ' 'LIBS= -ldl ' --cache-file=/dev/null --srcdir=.
configure:45942: result: ---------------------------------------------
configure:45944: result: --------- Done Configuring libMesh ----------
configure:45946: result: ---------------------------------------------

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_cxx_dlopen=yes
ac_cv_cxx_gcc_abi_demangle=yes
ac_cv_cxx_glibc_backtrace=yes
ac_cv_cxx_hash=yes
ac_cv_cxx_have_locale=yes
ac_cv_cxx_have_sstream=yes
ac_cv_cxx_namespaces=yes
ac_cv_cxx_rtti=yes
ac_cv_cxx_unordered_map=yes
ac_cv_cxx_unordered_multimap=yes
ac_cv_cxx_unordered_multiset=yes
ac_cv_cxx_unordered_set=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_HDF5_DIR_set=
ac_cv_env_HDF5_DIR_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_METHODS_set=
ac_cv_env_METHODS_value=
ac_cv_env_PETSC_ARCH_set=
ac_cv_env_PETSC_ARCH_value=
ac_cv_env_PETSC_DIR_set=
ac_cv_env_PETSC_DIR_value=
ac_cv_env_SLEPC_DIR_set=
ac_cv_env_SLEPC_DIR_value=
ac_cv_env_TRILINOS_DIR_set=
ac_cv_env_TRILINOS_DIR_value=
ac_cv_env_VTK_DIR_set=
ac_cv_env_VTK_DIR_value=
ac_cv_env_VTK_INCLUDE_set=
ac_cv_env_VTK_INCLUDE_value=
ac_cv_env_YACC_set=
ac_cv_env_YACC_value=
ac_cv_env_YFLAGS_set=
ac_cv_env_YFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_libmesh_CFLAGS_set=
ac_cv_env_libmesh_CFLAGS_value=
ac_cv_env_libmesh_CPPFLAGS_set=
ac_cv_env_libmesh_CPPFLAGS_value=
ac_cv_env_libmesh_CXXFLAGS_set=
ac_cv_env_libmesh_CXXFLAGS_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_fc_compiler_gnu=yes
ac_cv_file_src_base_libmesh_C=yes
ac_cv_have_decl__mkdir=no
ac_cv_have_decl_sigaction=yes
ac_cv_have_fedisableexcept=yes
ac_cv_have_feenableexcept=yes
ac_cv_header_Eigen_Dense=yes
ac_cv_header_Eigen_Sparse=yes
ac_cv_header_X11_Intrinsic_h=yes
ac_cv_header__include_petscversion_h=no
ac_cv_header__usr_include_Eigen_Eigen=no
ac_cv_header__usr_include_glpk_h=no
ac_cv_header__vtkConfigure_h=no
ac_cv_header_csignal=yes
ac_cv_header_direct_h=no
ac_cv_header_dlfcn_h=yes
ac_cv_header_fenv_h=yes
ac_cv_header_getopt_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_pwd_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_sys_utsname_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_xmmintrin_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_z_gzopen=yes
ac_cv_objext=o
ac_cv_path_CPPUNIT_CONFIG=no
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_PKG_CONFIG=/usr/bin/pkg-config
ac_cv_path_SED=/bin/sed
ac_cv_path_gitquery=/usr/bin/git
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_BUNZIP2=bunzip2
ac_cv_prog_BZIP2=bzip2
ac_cv_prog_CPP='mpicc -E'
ac_cv_prog_CXXCPP='mpicxx -E'
ac_cv_prog_XZ=xz
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=mpicc
ac_cv_prog_ac_ct_CXX=mpicxx
ac_cv_prog_ac_ct_F77=mpif77
ac_cv_prog_ac_ct_FC=mpif90
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_cos='none required'
ac_cv_search_dlopen=-ldl
ac_cv_search_sqrt='none required'
ac_cv_search_trunc='none required'
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_function_pointer=8
ac_cv_sizeof_int=4
ac_cv_sizeof_long_int=8
ac_cv_sizeof_short_int=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_unsigned_int=4
ac_cv_sizeof_void_p=8
ac_cv_target=x86_64-unknown-linux-gnu
ac_cv_tls=__thread
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
am_cv_prog_tar_ustar=gnutar
ax_cv_PTHREAD_PRIO_INHERIT=yes
ax_cv_cxx_compile_cxx11=yes
ax_cv_cxx_compiler_vendor=gnu
ax_cv_cxx_openmp=-fopenmp
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/x86_64-linux-gnu-ld
lt_cv_path_LDCXX='/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_compiler_static_works_F77=no
lt_cv_prog_compiler_static_works_FC=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[   ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[     ][  ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /mnt/x/libmesh/libmesh/build-aux/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_V='$(V)'
ANY_PARANOID_FLAGS=''
ANY_WERROR_FLAG=''
AR='ar'
AUTOCONF='${SHELL} /mnt/x/libmesh/libmesh/build-aux/missing autoconf'
AUTOHEADER='${SHELL} /mnt/x/libmesh/libmesh/build-aux/missing autoheader'
AUTOMAKE='${SHELL} /mnt/x/libmesh/libmesh/build-aux/missing automake-1.15'
AWK='gawk'
AZTECOO_INCLUDES=''
AZTECOO_LIBS=''
AZTECOO_MAKEFILE_EXPORT=''
BOOST_CPPFLAGS='-I/usr/include/'
BOOST_LDFLAGS='-L/usr/lib64'
BUILD_ARCH='x86_64-unknown-linux-gnu'
BUILD_DEVSTATUS='Development Build'
BUILD_HOST='Shawn-K430'
BUILD_METIS_FALSE='#'
BUILD_METIS_TRUE=''
BUILD_USER='yw5aj'
BUILD_VERSION='01381f2ae18d401864fddbad0cc09ee3cf73320a'
BUNZIP2='bunzip2'
BZIP2='bzip2'
CAPNPROTO_INCLUDE=''
CAPNPROTO_LIBRARY=''
CAPNP_BINARY=''
CC='mpicc'
CCDEPMODE='depmode=gcc3'
CFLAGS=''
CFLAGS_DBG='-g -Wimplicit    -fopenmp'
CFLAGS_DEVEL='-O2 -funroll-loops -fstrict-aliasing -g -Wimplicit -funroll-loops -fstrict-aliasing    -fopenmp'
CFLAGS_DVL=''
CFLAGS_OPROF='-O2 -funroll-loops -fstrict-aliasing   -g -fno-omit-frame-pointer  -fopenmp'
CFLAGS_OPT='-O2 -funroll-loops -fstrict-aliasing    -fopenmp'
CFLAGS_PROF='-O2 -funroll-loops -fstrict-aliasing   -pg  -fopenmp'
CODE_COVERAGE_ENABLED_FALSE=''
CODE_COVERAGE_ENABLED_TRUE='#'
CPP='mpicc -E'
CPPFLAGS=''
CPPFLAGS_DBG='-DDEBUG -D_GLIBCXX_DEBUG -D_GLIBCXX_DEBUG_PEDANTIC '
CPPFLAGS_DEVEL=' '
CPPFLAGS_OPROF='-DNDEBUG '
CPPFLAGS_OPT='-DNDEBUG '
CPPFLAGS_PROF='-DNDEBUG '
CPPUNIT_CFLAGS=''
CPPUNIT_CONFIG='no'
CPPUNIT_LIBS=''
CURL_INCLUDE=''
CURL_LIBRARY=''
CXX='mpicxx'
CXXCPP='mpicxx -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=''
CXXFLAGS_DBG=' -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual    -fopenmp'
CXXFLAGS_DEVEL=' -O2 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization    -fopenmp'
CXXFLAGS_DVL=''
CXXFLAGS_OPROF=' -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization   -g -fno-omit-frame-pointer  -fopenmp'
CXXFLAGS_OPT=' -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization    -fopenmp'
CXXFLAGS_PROF=' -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization   -pg  -fopenmp'
CXXSHAREDFLAG=''
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DOT=''
DOTPATH=''
DOXYGEN=''
DSYMUTIL=''
DTK_MAKEFILE_EXPORT=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EIGEN_INCLUDE='-I$(top_srcdir)/contrib/eigen/eigen'
EXEEXT=''
EXODUS_FORTRAN_API_FALSE='#'
EXODUS_FORTRAN_API_TRUE=''
EXODUS_INCLUDE='-I$(top_srcdir)/contrib/exodusii/v5.22/exodus/cbind/include'
EXODUS_NOT_NETCDF4_FLAG='-DNOT_NETCDF4'
F77='mpif77'
FC='mpif90'
FCFLAGS='-g -O2'
FFLAGS='-g -O2 -fopenmp'
FGREP='/bin/grep -F'
FLIBS=''
FPARSER_DEVEL_FALSE=''
FPARSER_DEVEL_TRUE='#'
FPARSER_INCLUDE='-I$(top_srcdir)/contrib/fparser'
FPARSER_LIBRARY='$(EXTERNAL_LIBDIR)/libfparser$(libext)'
FPARSER_RELEASE_FALSE='#'
FPARSER_RELEASE_TRUE=''
FPARSER_SUPPORT_DEBUGGING_FALSE=''
FPARSER_SUPPORT_DEBUGGING_TRUE='#'
FPARSER_SUPPORT_JIT_FALSE='#'
FPARSER_SUPPORT_JIT_TRUE=''
GCOV_FLAGS=''
GCOV_LDFLAGS=''
GIT_CHECKOUT_FALSE='#'
GIT_CHECKOUT_TRUE=''
GIT_REVISION='01381f2ae18d401864fddbad0cc09ee3cf73320a'
GLPK_INCLUDE=''
GLPK_LIBRARY=''
GMV_INCLUDE='-I$(top_srcdir)/contrib/gmv'
GMV_LIBRARY='$(EXTERNAL_LIBDIR)/libgmv$(libext)'
GREP='/bin/grep'
GXX_VERSION='gcc7'
GZSTREAM_INCLUDE='-I$(top_srcdir)/contrib/gzstream'
GZSTREAM_LIB='$(EXTERNAL_LIBDIR)/libgzstream$(libext) -lz'
HAVE_CXX11='1'
HAVE_CXX11_ALIAS_DECLARATIONS_FALSE='#'
HAVE_CXX11_ALIAS_DECLARATIONS_TRUE=''
HAVE_CXX11_AUTO_FALSE='#'
HAVE_CXX11_AUTO_TRUE=''
HAVE_CXX11_CONDITION_VARIABLE_FALSE='#'
HAVE_CXX11_CONDITION_VARIABLE_TRUE=''
HAVE_CXX11_CONSTEXPR_FALSE='#'
HAVE_CXX11_CONSTEXPR_TRUE=''
HAVE_CXX11_DECLTYPE_FALSE='#'
HAVE_CXX11_DECLTYPE_TRUE=''
HAVE_CXX11_DEFAULTED_FUNCTIONS_FALSE='#'
HAVE_CXX11_DEFAULTED_FUNCTIONS_TRUE=''
HAVE_CXX11_DELETED_FUNCTIONS_FALSE='#'
HAVE_CXX11_DELETED_FUNCTIONS_TRUE=''
HAVE_CXX11_ERF_FALSE='#'
HAVE_CXX11_ERF_TRUE=''
HAVE_CXX11_FINAL_FALSE='#'
HAVE_CXX11_FINAL_TRUE=''
HAVE_CXX11_FIXED_TYPE_ENUM_FALSE='#'
HAVE_CXX11_FIXED_TYPE_ENUM_FWD_FALSE='#'
HAVE_CXX11_FIXED_TYPE_ENUM_FWD_TRUE=''
HAVE_CXX11_FIXED_TYPE_ENUM_TRUE=''
HAVE_CXX11_INITIALIZER_LIST_FALSE='#'
HAVE_CXX11_INITIALIZER_LIST_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX_TRUE=''
HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_FALSE='#'
HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_TRUE=''
HAVE_CXX11_LAMBDA_FALSE='#'
HAVE_CXX11_LAMBDA_TRUE=''
HAVE_CXX11_MAKE_UNIQUE_WORKAROUND_FALSE='#'
HAVE_CXX11_MAKE_UNIQUE_WORKAROUND_TRUE=''
HAVE_CXX11_MOVE_CONSTRUCTORS_FALSE='#'
HAVE_CXX11_MOVE_CONSTRUCTORS_TRUE=''
HAVE_CXX11_NULLPTR_FALSE='#'
HAVE_CXX11_NULLPTR_TRUE=''
HAVE_CXX11_OVERRIDE_FALSE='#'
HAVE_CXX11_OVERRIDE_TRUE=''
HAVE_CXX11_RANGEFOR_FALSE='#'
HAVE_CXX11_RANGEFOR_TRUE=''
HAVE_CXX11_REGEX_FALSE='#'
HAVE_CXX11_REGEX_TRUE=''
HAVE_CXX11_RVALUE_REFERENCES_FALSE='#'
HAVE_CXX11_RVALUE_REFERENCES_TRUE=''
HAVE_CXX11_SHARED_PTR_FALSE='#'
HAVE_CXX11_SHARED_PTR_TRUE=''
HAVE_CXX11_THREAD_FALSE='#'
HAVE_CXX11_THREAD_TRUE=''
HAVE_CXX11_TO_STRING_FALSE='#'
HAVE_CXX11_TO_STRING_TRUE=''
HAVE_CXX11_TUPLE_FALSE='#'
HAVE_CXX11_TUPLE_TRUE=''
HAVE_CXX11_TYPE_TRAITS_FALSE='#'
HAVE_CXX11_TYPE_TRAITS_TRUE=''
HAVE_CXX11_UNIQUE_PTR_FALSE='#'
HAVE_CXX11_UNIQUE_PTR_TRUE=''
HAVE_CXX11_VARIADIC_TEMPLATES_FALSE='#'
HAVE_CXX11_VARIADIC_TEMPLATES_TRUE=''
HAVE_CXX14_MAKE_UNIQUE_FALSE='#'
HAVE_CXX14_MAKE_UNIQUE_TRUE=''
HAVE_CXX17_FALLTHROUGH_ATTRIBUTE_FALSE='#'
HAVE_CXX17_FALLTHROUGH_ATTRIBUTE_TRUE=''
HAVE_DOT=''
HAVE_DOUBLE_UNDERSCORE_ATTRIBUTE_FALLTHROUGH_FALSE=''
HAVE_DOUBLE_UNDERSCORE_ATTRIBUTE_FALLTHROUGH_TRUE='#'
HAVE_GCOV_TOOLS='0'
HDF5_CFLAGS=''
HDF5_CPPFLAGS=''
HDF5_CXXLIBS=''
HDF5_DIR=''
HDF5_FLIBS=''
HDF5_LIBS=''
HDF5_PREFIX=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LASPACK_INCLUDE=''
LASPACK_LIB=''
LD='/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64'
LDFLAGS=''
LIBHILBERT_INCLUDE='-I$(top_srcdir)/contrib/libHilbert/include'
LIBHILBERT_LIBRARY='$(EXTERNAL_LIBDIR)/libHilbert$(libext)'
LIBMESH_DBG_MODE_FALSE='#'
LIBMESH_DBG_MODE_TRUE=''
LIBMESH_DEVEL_MODE_FALSE='#'
LIBMESH_DEVEL_MODE_TRUE=''
LIBMESH_ENABLE_CAPNPROTO_FALSE=''
LIBMESH_ENABLE_CAPNPROTO_TRUE='#'
LIBMESH_ENABLE_COMPLEX_FALSE=''
LIBMESH_ENABLE_COMPLEX_TRUE='#'
LIBMESH_ENABLE_CPPUNIT_FALSE=''
LIBMESH_ENABLE_CPPUNIT_TRUE='#'
LIBMESH_ENABLE_CURL_FALSE=''
LIBMESH_ENABLE_CURL_TRUE='#'
LIBMESH_ENABLE_EIGEN_FALSE='#'
LIBMESH_ENABLE_EIGEN_TRUE=''
LIBMESH_ENABLE_EXAMPLES_FALSE='#'
LIBMESH_ENABLE_EXAMPLES_TRUE=''
LIBMESH_ENABLE_EXODUS_FALSE='#'
LIBMESH_ENABLE_EXODUS_TRUE=''
LIBMESH_ENABLE_EXODUS_V509_FALSE=''
LIBMESH_ENABLE_EXODUS_V509_TRUE='#'
LIBMESH_ENABLE_EXODUS_V522_FALSE='#'
LIBMESH_ENABLE_EXODUS_V522_TRUE=''
LIBMESH_ENABLE_FPARSER_FALSE='#'
LIBMESH_ENABLE_FPARSER_TRUE=''
LIBMESH_ENABLE_GLIBCXX_DEBUGGING_CPPUNIT_FALSE=''
LIBMESH_ENABLE_GLIBCXX_DEBUGGING_CPPUNIT_TRUE='#'
LIBMESH_ENABLE_GLIBCXX_DEBUGGING_FALSE='#'
LIBMESH_ENABLE_GLIBCXX_DEBUGGING_TRUE=''
LIBMESH_ENABLE_GLPK_FALSE=''
LIBMESH_ENABLE_GLPK_TRUE='#'
LIBMESH_ENABLE_GMV_FALSE='#'
LIBMESH_ENABLE_GMV_TRUE=''
LIBMESH_ENABLE_GZSTREAMS_FALSE='#'
LIBMESH_ENABLE_GZSTREAMS_TRUE=''
LIBMESH_ENABLE_HDF5_FALSE=''
LIBMESH_ENABLE_HDF5_TRUE='#'
LIBMESH_ENABLE_INFINITE_ELEMENTS_FALSE='#'
LIBMESH_ENABLE_INFINITE_ELEMENTS_TRUE=''
LIBMESH_ENABLE_LASPACK_FALSE=''
LIBMESH_ENABLE_LASPACK_TRUE='#'
LIBMESH_ENABLE_LIBHILBERT_FALSE='#'
LIBMESH_ENABLE_LIBHILBERT_TRUE=''
LIBMESH_ENABLE_METAPHYSICL_FALSE='#'
LIBMESH_ENABLE_METAPHYSICL_TRUE=''
LIBMESH_ENABLE_METIS_FALSE='#'
LIBMESH_ENABLE_METIS_TRUE=''
LIBMESH_ENABLE_NANOFLANN_FALSE='#'
LIBMESH_ENABLE_NANOFLANN_TRUE=''
LIBMESH_ENABLE_NEMESIS_FALSE='#'
LIBMESH_ENABLE_NEMESIS_TRUE=''
LIBMESH_ENABLE_NEMESIS_V309_FALSE=''
LIBMESH_ENABLE_NEMESIS_V309_TRUE='#'
LIBMESH_ENABLE_NEMESIS_V522_FALSE='#'
LIBMESH_ENABLE_NEMESIS_V522_TRUE=''
LIBMESH_ENABLE_NETCDF_FALSE='#'
LIBMESH_ENABLE_NETCDF_TRUE=''
LIBMESH_ENABLE_NETCDF_V3_FALSE=''
LIBMESH_ENABLE_NETCDF_V3_TRUE='#'
LIBMESH_ENABLE_NETCDF_V4_FALSE='#'
LIBMESH_ENABLE_NETCDF_V4_TRUE=''
LIBMESH_ENABLE_NLOPT_FALSE=''
LIBMESH_ENABLE_NLOPT_TRUE='#'
LIBMESH_ENABLE_PARMETIS_FALSE='#'
LIBMESH_ENABLE_PARMETIS_TRUE=''
LIBMESH_ENABLE_PETSC_FALSE=''
LIBMESH_ENABLE_PETSC_TRUE='#'
LIBMESH_ENABLE_QHULL_FALSE='#'
LIBMESH_ENABLE_QHULL_TRUE=''
LIBMESH_ENABLE_SFC_FALSE=''
LIBMESH_ENABLE_SFC_TRUE='#'
LIBMESH_ENABLE_SLEPC_FALSE=''
LIBMESH_ENABLE_SLEPC_TRUE='#'
LIBMESH_ENABLE_TECIO_FALSE='#'
LIBMESH_ENABLE_TECIO_TRUE=''
LIBMESH_ENABLE_TECPLOT_FALSE=''
LIBMESH_ENABLE_TECPLOT_TRUE='#'
LIBMESH_ENABLE_TETGEN_FALSE=''
LIBMESH_ENABLE_TETGEN_TRUE='#'
LIBMESH_ENABLE_TRIANGLE_FALSE=''
LIBMESH_ENABLE_TRIANGLE_TRUE='#'
LIBMESH_ENABLE_VTK_FALSE=''
LIBMESH_ENABLE_VTK_TRUE='#'
LIBMESH_INSTALL_INTERNAL_BOOST_FALSE=''
LIBMESH_INSTALL_INTERNAL_BOOST_TRUE='#'
LIBMESH_INSTALL_INTERNAL_EIGEN_FALSE='#'
LIBMESH_INSTALL_INTERNAL_EIGEN_TRUE=''
LIBMESH_OPROF_MODE_FALSE=''
LIBMESH_OPROF_MODE_TRUE='#'
LIBMESH_OPT_MODE_FALSE='#'
LIBMESH_OPT_MODE_TRUE=''
LIBMESH_PROF_MODE_FALSE=''
LIBMESH_PROF_MODE_TRUE='#'
LIBMESH_VPATH_BUILD_FALSE=''
LIBMESH_VPATH_BUILD_TRUE='#'
LIBOBJS=''
LIBS='-ldl '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /mnt/x/libmesh/libmesh/build-aux/missing makeinfo'
MANIFEST_TOOL=':'
METAPHYSICL_INCLUDE='-I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/numerics/include -I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/core/include -I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/utilities/include'
METHOD=''
METHODS='dbg devel opt'
METIS_INCLUDE='-I$(top_srcdir)/contrib/metis/include'
METIS_LIB='$(EXTERNAL_LIBDIR)/libmetis$(libext) $(EXTERNAL_LIBDIR)/libGK$(libext)'
MKDIR_P='/bin/mkdir -p'
ML_INCLUDES=''
ML_LIBS=''
ML_MAKEFILE_EXPORT=''
MPCXX=''
MPI='/usr'
MPI_IMPL='built-in'
MPI_INCLUDES_PATH='/usr/include'
MPI_INCLUDES_PATHS=''
MPI_LIBS=''
MPI_LIBS_PATH='/usr/lib'
MPI_LIBS_PATHS=''
NANOFLANN_INCLUDE='-I$(top_srcdir)/contrib/nanoflann/include'
NEMESIS_INCLUDE='-I$(top_srcdir)/contrib/nemesis/v5.22/nemesis'
NETCDF_INCLUDE='-I$(top_srcdir)/contrib/netcdf/v4/include'
NLOPT_INCLUDE='-I'
NLOPT_LIBRARY='-L -lnlopt'
NM='/usr/bin/nm -B'
NMEDIT=''
NODEPRECATEDFLAG='-Wno-deprecated'
NOX_INCLUDES=''
NOX_LIBS=''
NOX_MAKEFILE_EXPORT=''
OBJDUMP='objdump'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OPENMP_CXXFLAGS='-fopenmp'
OPENMP_FFLAGS='-fopenmp'
OPROFILE_FLAGS='-g -fno-omit-frame-pointer'
OTOOL64=''
OTOOL=''
PACKAGE='libmesh'
PACKAGE_BUGREPORT='libmesh-users@lists.sourceforge.net'
PACKAGE_NAME='libmesh'
PACKAGE_STRING='libmesh 1.4.0-pre'
PACKAGE_TARNAME='libmesh'
PACKAGE_URL='http://libmesh.github.io'
PACKAGE_VERSION='1.4.0-pre'
PARMETIS_INCLUDE='-I$(top_srcdir)/contrib/parmetis/include'
PARMETIS_LIB='$(EXTERNAL_LIBDIR)/libparmetis$(libext)'
PATH_SEPARATOR=':'
PERL='/usr/bin/perl'
PETSCARCH=''
PETSCINCLUDEDIRS=''
PETSCLINKLIBS=''
PETSC_ARCH=''
PETSC_CC_INCLUDES=''
PETSC_DIR=''
PETSC_FC_INCLUDES=''
PKG_CONFIG='/usr/bin/pkg-config'
PROFILING_FLAGS='-pg'
PRTDIAG=''
PTHREAD_CC='mpicc'
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
PWD='/mnt/x/libmesh/libmesh'
QHULL_LIBS='-lm'
RANLIB='ranlib'
RPATHFLAG='-Wl,-rpath,'
SED='/bin/sed'
SET_MAKE=''
SFC_INCLUDE=''
SFC_LIB=''
SHELL='/bin/bash'
SLEPC_DIR=''
SLEPC_INCLUDE=''
SLEPC_LIBS=''
STRIP='strip'
TBB_INCLUDE=''
TBB_LIBRARY=''
TECIO_CPPFLAGS='-DLINUX64 -DLINUX -I/usr/include'
TECIO_INCLUDE='-I$(top_srcdir)/contrib/tecplot/tecio/include'
TETGEN_INCLUDE=''
TETGEN_LIBRARY=''
TPETRA_INCLUDES=''
TPETRA_LIBS=''
TPETRA_MAKEFILE_EXPORT=''
TRIANGLE_INCLUDE=''
TRIANGLE_LIBRARY=''
TRILINOS_DIR='/usr/include/trilinos'
TRILINOS_INCLUDES=''
TRILINOS_LIBS=''
TRILINOS_MAKEFILE_EXPORT=''
VERSION='1.4.0-pre'
VTK_DIR='/usr'
VTK_INCLUDE=''
VTK_LIBRARY=''
XZ='xz'
YACC='yacc'
YFLAGS=''
ac_ct_AR='ar'
ac_ct_CC='mpicc'
ac_ct_CXX='mpicxx'
ac_ct_DUMPBIN=''
ac_ct_F77='mpif77'
ac_ct_FC='mpif90'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='tar --format=ustar -chf - "$$tardir"'
am__untar='tar -xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enabledeprecated='yes'
enablefwdenums='yes'
enablelegacyincludepaths='no'
enablepetsc='no'
enableuniqueptr='irrelevant'
enablewarnings='yes'
exec_prefix='${prefix}'
gitquery='/usr/bin/git'
have_gcov=''
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /mnt/x/libmesh/libmesh/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
libmesh_CFLAGS=' '
libmesh_CPPFLAGS=''
libmesh_CXXFLAGS=' '
libmesh_LDFLAGS=''
libmesh_contrib_INCLUDES='-I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/numerics/include -I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/core/include -I$(top_srcdir)/contrib/metaphysicl/0.2.0/src/utilities/include -I$(top_srcdir)/contrib/nanoflann/include -I$(top_srcdir)/contrib/fparser -I$(top_srcdir)/contrib/libHilbert/include -I$(top_srcdir)/contrib/nemesis/v5.22/nemesis -I$(top_srcdir)/contrib/exodusii/v5.22/exodus/cbind/include -I$(top_srcdir)/contrib/netcdf/v4/include -I$(top_srcdir)/contrib/eigen/eigen -I$(top_srcdir)/contrib/gmv -I$(top_srcdir)/contrib/qhull/qhull/src -I$(top_srcdir)/contrib/qhull/qhull/src/libqhullcpp -I$(top_srcdir)/contrib/parmetis/include -I$(top_srcdir)/contrib/metis/include -I$(top_srcdir)/contrib/tecplot/tecio/include -I$(top_srcdir)/contrib/gzstream '
libmesh_installed_LIBS=''
libmesh_optional_INCLUDES='-I/usr/include'
libmesh_optional_LIBS='-lz'
libmesh_pkgconfig_requires='netcdf >= 4.2 '
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
petscmajor=''
petscmajorminor=''
petscversion=''
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' contrib/netcdf/v4 contrib/metaphysicl/0.2.0'
sysconfdir='${prefix}/etc'
target='x86_64-unknown-linux-gnu'
target_alias=''
target_cpu='x86_64'
target_os='linux-gnu'
target_vendor='unknown'
vtkbuild=''
vtkmajor=''
vtkversion=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "libmesh"
#define PACKAGE_TARNAME "libmesh"
#define PACKAGE_VERSION "1.4.0-pre"
#define PACKAGE_STRING "libmesh 1.4.0-pre"
#define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
#define PACKAGE_URL "http://libmesh.github.io"
#define CONFIGURE_INFO "./configure "
#define PACKAGE "libmesh"
#define VERSION "1.4.0-pre"
#define HAVE_CXX11 1
#define HAVE_CXX11_AUTO 1
#define HAVE_CXX11_RANGEFOR 1
#define HAVE_CXX11_INITIALIZER_LIST 1
#define HAVE_CXX11_UNIQUE_PTR 1
#define HAVE_CXX11_MAKE_UNIQUE_WORKAROUND 1
#define HAVE_CXX11_TUPLE 1
#define HAVE_CXX11_LAMBDA 1
#define HAVE_CXX11_FIXED_TYPE_ENUM 1
#define HAVE_CXX11_FIXED_TYPE_ENUM_FWD 1
#define HAVE_CXX11_OVERRIDE 1
#define HAVE_CXX11_MOVE_CONSTRUCTORS 1
#define HAVE_CXX11_DELETED_FUNCTIONS 1
#define HAVE_CXX11_DEFAULTED_FUNCTIONS 1
#define HAVE_CXX11_NULLPTR 1
#define HAVE_CXX11_FINAL 1
#define HAVE_CXX11_DECLTYPE 1
#define HAVE_CXX11_RVALUE_REFERENCES 1
#define HAVE_CXX11_CONSTEXPR 1
#define HAVE_CXX11_ALIAS_DECLARATIONS 1
#define HAVE_CXX11_SHARED_PTR 1
#define HAVE_CXX14_MAKE_UNIQUE 1
#define HAVE_CXX11_REGEX 1
#define HAVE_CXX11_VARIADIC_TEMPLATES 1
#define HAVE_CXX11_THREAD 1
#define HAVE_CXX11_CONDITION_VARIABLE 1
#define HAVE_CXX11_TYPE_TRAITS 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_SINE_COMPLEX 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_COSINE_COMPLEX 1
#define HAVE_CXX11_INVERSE_HYPERBOLIC_TANGENT_COMPLEX 1
#define HAVE_CXX11_ERF 1
#define HAVE_CXX11_TO_STRING 1
#define HAVE_CXX17_FALLTHROUGH_ATTRIBUTE 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define MAJOR_VERSION 1
#define MINOR_VERSION 4
#define MICRO_VERSION 0
#define LIB_VERSION "1.4.0-pre"
#define LIB_RELEASE ""
#define CXX "mpicxx"
#define IO_COMPATIBILITY_VERSION "0.7.4"
#define HAVE_NAMESPACES /**/
#define DEFAULT_DOUBLE_PRECISION 1
#define DEFAULT_SCALAR_TYPE double
#define restrict __restrict
#define HAVE_PWD_H 1
#define HAVE_GETPWUID 1
#define ENABLE_EXCEPTIONS 1
#define ENABLE_TIMESTAMPS 1
#define SIZEOF_SHORT_INT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED_INT 4
#define SIZEOF_SIZE_T 8
#define SIZEOF_LONG_INT 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_VOID_P 8
#define SIZEOF_FUNCTION_POINTER 8
#define HAVE_RTTI /**/
#define HAVE_GETOPT_H 1
#define HAVE_CSIGNAL 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_LOCALE /**/
#define HAVE_SSTREAM /**/
#define HAVE_STRINGSTREAM /**/
#define HAVE_FENV_H 1
#define HAVE_XMMINTRIN_H 1
#define HAVE_FEENABLEEXCEPT 1
#define HAVE_FEDISABLEEXCEPT 1
#define HAVE_DECL_SIGACTION 1
#define HAVE_MKDIR /**/
#define HAVE_DECL__MKDIR 0
#define HAVE_SYS_UTSNAME_H 1
#define HAVE_STD_UNORDERED_MULTIMAP 1
#define BEST_UNORDERED_MULTIMAP std::unordered_multimap
#define INCLUDE_UNORDERED_MULTIMAP <unordered_map>
#define HAVE_STD_UNORDERED_MAP 1
#define BEST_UNORDERED_MAP std::unordered_map
#define INCLUDE_UNORDERED_MAP <unordered_map>
#define HAVE_STD_UNORDERED_MULTISET 1
#define BEST_UNORDERED_MULTISET std::unordered_multiset
#define INCLUDE_UNORDERED_MULTISET <unordered_set>
#define HAVE_STD_UNORDERED_SET 1
#define BEST_UNORDERED_SET std::unordered_set
#define INCLUDE_UNORDERED_SET <unordered_set>
#define HAVE_STD_HASH 1
#define BEST_HASH std::hash
#define INCLUDE_HASH <functional>
#define DEFINE_HASH_STRING /**/
#define DEFINE_HASH_POINTERS /**/
#define HAVE_DLOPEN 1
#define HAVE_GCC_ABI_DEMANGLE 1
#define HAVE_GLIBC_BACKTRACE 1
#define GDB_COMMAND "gdb"
#define ENABLE_UNIQUE_PTR 1
#define ENABLE_WARNINGS 1
#define ENABLE_DEPRECATED 1
#define FORWARD_DECLARE_ENUMS 1
#define REQUIRE_SEPARATE_NAMESPACE 1
#define BOUNDARY_ID_BYTES 2
#define DOF_ID_BYTES 4
#define PROCESSOR_ID_BYTES 2
#define SUBDOMAIN_ID_BYTES 2
#define UNIQUE_ID_BYTES 8
#define ENABLE_AMR 1
#define ENABLE_VSMOOTHER 1
#define ENABLE_PERIODIC 1
#define ENABLE_DIRICHLET 1
#define ENABLE_GHOSTED 1
#define ENABLE_NODE_VALENCE 1
#define DIM 3
#define ENABLE_HIGHER_ORDER_SHAPES 1
#define ENABLE_SECOND_DERIVATIVES 1
#define USE_REAL_NUMBERS 1
#define ENABLE_REFERENCE_COUNTING 1
#define HAVE_XDR 1
#define HAVE_BOOST 1
#define HAVE_EXTERNAL_BOOST 1
#define HAVE_BOOST_MOVELIB_UNIQUE_PTR 1
#define HAVE_MPI 1
#define TRILINOS_HAVE_NOX 1
#define TRILINOS_HAVE_DTK 1
#define HAVE_OPENMP 1
#define HAVE_PTHREAD_PRIO_INHERIT 1
#define HAVE_PTHREAD 1
#define USING_THREADS 1
#define HAVE_ZLIB_H 1
#define HAVE_GZSTREAM 1
#define HAVE_BZIP 1
#define HAVE_XZ 1
#define SIZEOF_VOID_P 8
#define HAVE_TECPLOT_API 1
#define HAVE_TECPLOT_API_112 1
#define HAVE_METIS 1
#define TLS __thread
#define HAVE_PARMETIS 1
#define HAVE_QHULL_API 1
#define HAVE_GMV 1
#define HAVE_EIGEN_DENSE 1
#define HAVE_EIGEN_SPARSE 1
#define HAVE_EIGEN 1
#define HAVE_NETCDF 1
#define HAVE_EXODUS_API 1
#define HAVE_NEMESIS_API 1
#define HAVE_LIBHILBERT 1
#define HAVE_FPARSER 1
#define HAVE_FPARSER_DEVEL 0
#define HAVE_FPARSER_JIT 1
#define HAVE_NANOFLANN 1
#define HAVE_METAPHYSICL 1
#define BUILD_USER "yw5aj"
#define BUILD_ARCH "x86_64-unknown-linux-gnu"
#define BUILD_HOST "Shawn-K430"
#define BUILD_VERSION "01381f2ae18d401864fddbad0cc09ee3cf73320a"
#define BUILD_DEVSTATUS "Development Build"
#define BUILD_DATE __DATE__ " " __TIME__

configure: exit 0