Data availability - Githubissues

fred-atherden commented 5 years ago

A paragraph of plain text containing citations of data references from the main reference list.

User Stories

Author

As an author, I want to be able to edit the Data availability statement so that I can correct mistakes and add missing information.
As an author, I want to be able to add hyperlinks to the Data availability statement so that I can link out to repositories, GitHub, DOIs etc.
As an author, I want to be able to add reference citations to the Data availability statement so that I can cite the relevant data references for generated and previously published datasets.

Production staff

But what if . . . ?

Considerations

Data availability is a section containing a <title> and a <p>.
Datasets described here will ideally be added as data references to the main reference list.
At eLife, all research articles have data availability sections but magazine/non-research content does not.

XML requirements

JATS4R recommendation

Data availability sections are captured as a sec[@sec-type="data-availability"] element, which is a child of back.

They contain a statement (captured as a p).

<sec sec-type="data-availability">
   <title>Data availability</title>
   <p>The ChIP-seq and RNA-seq data generated in this study are available at NCBI Gene Expression Omnibus (accession number GSE115928) (<xref ref-type="bibr" rid="bib45">Smith et al,
2015</xref>). Gene lists generated in this study, including lists of genes differentially expressed at meiotic initiation, STRA8-bound genes, and STRA8-activated genes are available in Supplementary file 1. RNA-seq results and STRA8 binding status for all protein-coding genes are available in Supplementary file 2, as are the numbers of CNCCTCAG promoter motifs for all genes. Data for a meiotic prophase gene list described previously (<xref ref-type="bibr" rid="bib45">Soh et al,
2015</xref>) are available in Supplementary file 3. Source data files have been provided for Figures 1-6.</p>
    ...
</sec>

They will typically cite dataset type references captured in the ref-list.

Taken from: https://github.com/elifesciences/TextureRequirements/issues/58

NickDuf commented 5 years ago

See inVision file for design proposal