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libnano / primer3-py

Simple oligo analysis and primer design
https://libnano.github.io/primer3-py
GNU General Public License v2.0
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Highlight removal of camelCase aliases in v2.0.0 #132

Closed peterjc closed 7 months ago

peterjc commented 7 months ago

I ran into this trying to run some code from June 2022 (presumably using primer3-py v0.6.1)

Cross reference #125

benpruitt commented 7 months ago

The camelCase aliases should still be present in v2.x.x but a deprecation warning will be displayed if they are used. For example, designPrimers:

https://github.com/libnano/primer3-py/blob/v2.0.2/primer3/bindings.py#L558 https://github.com/libnano/primer3-py/blob/v2.0.2/primer3/bindings.py#L581 https://github.com/libnano/primer3-py/blob/v2.0.2/primer3/__init__.py#L73

So you should be able to do either of the following:

from primer3 import designPrimers
from primer3.bindings import designPrimers

I just did a clean install locally as a sanity check:

In [1]: from primer3 import designPrimers

In [2]: from primer3.bindings import designPrimers

In [3]: import primer3; print(primer3.__version__)
2.0.2

But maybe I'm missing something @peterjc?

peterjc commented 7 months ago

You're right, I must have been misreading something with the setGlobals import failing (#133). Apologies for the noise.