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lichen-lab / circMeta

A unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs
https://github.com/lichen-lab/circMeta
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pseudo count in deSeq2 #7

Open Rumonnord opened 1 year ago

Rumonnord commented 1 year ago

Hi, Thank you for this useful tool. I am trying to do deseq2 using circJuncDE. I did not find an option to handle zero count with a pseudo count. I saw there is an option in circCLRDE that does not apply in circJuncDE. Please le me know how to solve this issue.