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lidaof / eg-react

WashU Epigenome Browser
https://epigenomegateway.wustl.edu
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Tracks not loading from hub #262

Closed albertoriva closed 4 months ago

albertoriva commented 2 years ago

Hello,

I am trying to load three tracks from a hub with the following definition:

[ { "type": 'bigbed', "name": 'CEM-W-C_peaks', "height": 50, "group": 2, "colorpositive": "#000000", "colornegative": "#000000", "horizontalLines": [{"value": 0, "color": "#000000"}], "mode": "thin", "url": "https://bw:bw@lichtlab.cancer.ufl.edu/reports/NSD2/NS1813-dasa//NS1813/CEM-W-C/CEM-W-C.bbed" }, { "type": "hammock", "mode": "barplot", "name": "CEM-W-C_ham", "url": "https://bw:bw@lichtlab.cancer.ufl.edu/reports/NSD2/NS1813-dasa//NS1813/CEM-W-C/CEM-W-C.bed.gz" }, { "type": "bigwig", "name": "CEM-W-C", "height": 50, "group": 1, "colorpositive": "#000000", "colornegative": "#000000", "horizontalLines": [], "mode": "show", "url": "https://bw:bw@lichtlab.cancer.ufl.edu/reports/NSD2/NS1813-dasa//NS1813/CEM-W-C/CEM-W-C.bw" }, ]

I've verified ll three track files are correctly accessible. When I load it, the bigbed track loads but says that it doesn't contain any data. The hammock track gives an error ("missing track for reordering") and only the bigwig track displays correctly.

If I look in the server logs, the browser only sends a request for the bigwig file, and doesn't send any request for the other two files.

What is going on?

Thank you!

lidaof commented 2 years ago

Hi @albertoriva i think this syntax and password protected URL works for the legacy browser, just want to confirm you are using the legacy browser? i am testing it.

lidaof commented 2 years ago

apache log says:

[Sun Apr 24 21:50:03.073040 2022] [cgi:error] [pid 5751] [client 128.252.217.134:35637] AH01215: tabix file error: https://bw:bw@lichtlab.cancer.ufl.edu/reports/NSD2/NS1813-dasa//NS1813/CEM-W-C/CEM-W-C.bed.gz: /usr/lib/cgi-bin/subtleKnife

sorry, I haven't review the legacy code for a long time, still troubleshooting..

albertoriva commented 1 year ago

Yes, sorry - it's the legacy browser.

Thanks,

Alberto

On Sun, Apr 24, 2022, 10:04 PM Daofeng Li @.***> wrote:

Hi @albertoriva https://github.com/albertoriva i think this syntax and password protected URL works for the legacy browser, just want to confirm you are using the legacy browser? i am testing it.

— Reply to this email directly, view it on GitHub https://github.com/lidaof/eg-react/issues/262#issuecomment-1107987799, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABTWE6WLAVXUGQX4Z6LLSULVGX4SXANCNFSM5UHBGOLA . You are receiving this because you were mentioned.Message ID: @.***>