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lidaof / eg-react

WashU Epigenome Browser
https://epigenomegateway.wustl.edu
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Embedding question #341

Open chenchen-eng opened 8 months ago

chenchen-eng commented 8 months ago

Hello, teacher. I would like to embed Eg-react into my own webpage using your example code. How can I change the genome information and annotation details? It seems that your documentation doesn't provide instructions on this. Thank you, teacher

lidaof commented 8 months ago

Hi @chenchen-eng, thanks for using the Browser! In the documentation, https://eg.readthedocs.io/en/latest/installation.html#embedding, please notice the line contains genomeName: "mm10",, this is where you can change the genome, in the following tracks array you can change annotation and other tracks. Hope this helps.

chenchen-eng commented 8 months ago

Thank you for your answer, teacher. How can I use my own genome? Changing the name seems to only allow the use of existing genome files

chenchen-eng commented 8 months ago

and install enter error:npm ERR! cb() never called!

npm ERR! This is an error with npm itself. Please report this error at: npm ERR! https://npm.community

npm ERR! A complete log of this run can be found in: npm ERR! /root/.npm/_logs/2023-11-29T14_05_52_098Z-debug.log i should how to do?thanks

lidaof commented 8 months ago

Correct, currently the example code only supports the genomes we loaded. In your case, you need to add your own genome following https://eg.readthedocs.io/en/latest/add.html

lidaof commented 8 months ago

and install enter error:npm ERR! cb() never called!

npm ERR! This is an error with npm itself. Please report this error at: npm ERR! https://npm.community

npm ERR! A complete log of this run can be found in: npm ERR! /root/.npm/_logs/2023-11-29T14_05_52_098Z-debug.log i should how to do?thanks

please try using node version 18 or 16, we are testing on node version 20 and above.

chenchen-eng commented 7 months ago

thanks teacher ,but met a error npm WARN deprecated request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142 npm WARN deprecated svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x. npm ERR! code ENOMEM npm ERR! syscall spawn npm ERR! errno -12 npm ERR! spawn ENOMEM npm ERR! code ENOMEM npm ERR! syscall spawn npm ERR! errno -12 npm ERR! spawn ENOMEM

npm ERR! A complete log of this run can be found in: npm ERR! /root/.npm/_logs/2023-11-30T12_13_58_478Z-debug-0.log we should how to solve it Thanks

chenchen-eng commented 7 months ago

use docker solve the question. but encount other question: ? Something is already running on port 3000. Probably: /usr/local/lighthouse/softwares/nodejs/node/bin/node /usr/local/lighthouse/softwares/nodejs/app/app.js (pid 1928) in /

Would you like to run the app on another port instead? › (Y/n) thanks teacher

lidaof commented 7 months ago

Hi @chenchen-eng you can type Y here to allow the App run on another port

chenchen-eng commented 7 months ago

thanks teacher,please Are there any requirements for server configuration? Can my online server run with 2G of memory?

chenchen-eng commented 7 months ago

it also encount a error :

epgg@54.0.4 start react-app-rewired start

Failed to compile.

Invalid configuration object. Webpack has been initialized using a configuration object that does not match the API schema.

lidaof commented 7 months ago

thanks teacher,please Are there any requirements for server configuration? Can my online server run with 2G of memory?

Hi @chenchen-eng if you need run npm start or npm run build, it's recommended to have at least 8G RAM for hosting the built scripts with Apache, then any server with >512M RAM should work

lidaof commented 7 months ago

Hi @chenchen-eng

try using the zip file below: https://wangftp.wustl.edu/~dli/test/frontend.zip if you are using node v18, type export NODE_OPTIONS=--openssl-legacy-provider before npm start no need to run npm install with this file.