search

lidaof / eg-react

WashU Epigenome Browser
https://epigenomegateway.wustl.edu
Other
68 stars 30 forks source link

Epigenome roadmap data from Public Data Hubs does not load #93

Closed grace-hansen closed 1 year ago

grace-hansen commented 5 years ago

Hi,

Wen I try to load data from the Epigenome roadmap that's hosted on the WashU browser, it fails to load.

This is what I do to load the data: Tracks --> Public Data Hubs --> Reference human epigenomes from Roadmap Epigenomics Consortium: Complete Consolidated Dataset --> Adult Cells/Tissues,Fat,Adipose Nuclei --> "H3K4me1 narrowPeak of Adipose Nuclei"

The browser just shows an empty red box where the track should be with an error message saying "Unknown track type: "hammock".

I think that a lot of the Epigenome Roadmap data are stored as hammock files, and those no longer exist on the browser, so there's an error.

lidaof commented 5 years ago

Hi @gracilis you are correct, we are actually working on this. The hammock peak format is not supported yet, but will be. Sorry for the trouble.

lidaof commented 5 years ago

Hi @gracilis , sorry for later notice. the hammock track had be added. It will be shown like regular bed track for now. More track configurations are under development.