Decouples phenowrangle and all unnecessary tasks - Githubissues

lifebit-ai / gwas

GWAS pipeline using SAIGE

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Decouples phenowrangle and all unnecessary tasks #100

Closed mcamarad closed 3 years ago

mcamarad commented 3 years ago

Summary

Decouples all non-required processes from this pipeline

Tasks

[x] Decouples LDSC, phenowrangle and additional tasks that are not relevant for this pipeline
[x] modify CI tests accordingly
[x] Updates docs

Comments

Will preserve marcos-intersects-sampleID-vcf branch as archive branch

CI tests

https://github.com/lifebit-ai/gel-gwas/actions/runs/504705507

CloudOS tests

https://cloudos.lifebit.ai/public/jobs/600e892657851f0112c98bf2