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lifebit-ai / gwas

GWAS pipeline using SAIGE
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Flexible input for phenotype name #107

Closed evagradovich closed 2 years ago

evagradovich commented 3 years ago

Keep PHE as default

manu-lifebit commented 3 years ago

As the pheno file could be generated by other pipelines as the pca-gwas pipeline it would be convenient to avoid hardcoding the pheno variable name. I suggest to change this and add the parameter in the nextflow.config file.

https://github.com/lifebit-ai/gwas/blob/ff2158f44893146c828102fb2ab0a2e7c0612358/main.nf#L253

evagradovich commented 2 years ago

Resolved