{EG} add analysis mode to SAIGE - Githubissues

lifebit-ai / gwas

GWAS pipeline using SAIGE

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{EG} add analysis mode to SAIGE #131

Open evagradovich opened 2 years ago

evagradovich commented 2 years ago

Overview

This PR adds --saige_analysis_type option to association testing SAIGE process

Changes

adds saige_analysis_type to nextflow.config
adds to docs
adds parameter validation restring to additive, recessive and dominant.
sets additive as default

Test