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gwas
GWAS pipeline using SAIGE
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Run realistic GENOMICC gwas with 1500 participants and sites with MAF > 0.005
#16
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cgpu
opened
4 years ago
cgpu
commented
4 years ago
[ ] @kousathanas to request the upload of filtered VCFs at MAF > 0.005 (120TB - 200TB)
featurespace ~ 100.000.000
[ ] note down by what percentage the featurespace was reduced after applying above filtering
[ ] subset (if needed) multisample vcf to only have the 1500 participants for the GENOMICC analysis
[ ] run test in GEL CloudOS within VDI