Add -S flag to bcftools view and use phenoFile's 1st column (IID column) - Githubissues

lifebit-ai / gwas

GWAS pipeline using SAIGE

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Add -S flag to bcftools view and use phenoFile's 1st column (IID column) #18

Open cgpu opened 4 years ago

cgpu commented 4 years ago

https://github.com/lifebit-ai/gel-gwas/blob/a83861f35103cbbdb7a1158d9435ac58ea62257b/main.nf#L50