Add process to analyse X chr - Githubissues

lifebit-ai / gwas

GWAS pipeline using SAIGE

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Add process to analyse X chr #42

Open cgpu opened 4 years ago

cgpu commented 4 years ago

Use latest SAIGE version, this one wzhou88/saige:0.42.1

We need to discuss the analysis of the X chromosome specifically. Need to install and use an updated version of SAIGE.

In terms of how its coded, u can change the name to "23" instead of "X"
Y and MT will not be used at the moment

Originally posted by @kousathanas in https://github.com/lifebit-ai/gel-gwas/issues/36#issuecomment-705056895