lifebit-ai / gwas

GWAS pipeline using SAIGE
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Replace duplicate gwas_1_fit_null_glmm by refactoring (expose traitType, invNormalize ) #97

Closed cgpu closed 3 years ago

cgpu commented 3 years ago

If quantitative:

process gwas_1_fit_null_glmm_qt:

      --traitType=quantitative       \
      --invNormalize=TRUE   \

process gwas_1_fit_null_glmm_bin:

      --traitType=binary       \
      --invNormalize=FALSE  \
evagradovich commented 3 years ago

Resolved in https://github.com/lifebit-ai/gel-gwas/pull/105