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lifewatch-eric / ecoportal_web_ui

A Rails application for ontologies
http://bioportal.bioontology.org/
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The semantic resource processing failed, with the current statuses: (Uploaded, Error Rdf) #67

Open martinaPulieri opened 1 week ago

martinaPulieri commented 1 week ago

We were trying to upload a new resource (https://ecoportal.lifewatchdev.eu/ontologies/ETS_T2), but this error came up.

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We tried to upload it with a pull URL (https://data.biodivportal.gfbio.org/ontologies/ETS/download), and also with the owl file, but we had the same error.

As I was mentioning in the first meeting, we are not capable of understanding the issue behind it.

syphax-bouazzouni commented 1 week ago

Hello @martinaPulieri , it seems to work now, did you change something?

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Generally Error RDF status means the file has a syntax error. Right now we don't have an easy way for admin/users to check the syntax error, except going to the parsing logs on the admin page.

martinaPulieri commented 1 week ago

No, I didn't touch anything. But the tab classes is empty.

dadeex commented 1 week ago

Also for new processed sources the issue remains

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syphax-bouazzouni commented 6 days ago

Hello @martinaPulieri, the issue with ETS_T2 was in the type of the resource it was set to OBO; but changing it to OWL format, made it work. (https://ecoportal.lifewatchdev.eu/ontologies/ETS_T2?p=classes) image

Also for new processed sources the issue remains image

Hello @dadeex, it is not the same cause, the issue with INRAETHES is the URI metadata of that ontology was not correct, so changing from https://www.davide.davide/inrae to the correct one http://opendata.inrae.fr/thesaurusINRAE/thesaurusINRAE, fixed that ontology https://ecoportal.lifewatchdev.eu/ontologies/INRAETHESTEST3?p=classes.

Having a wrong URI, makes it try to show all the concepts, not only the main ones. Showing all the concepts takes too much time, which explains the infinite load.

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