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lifs-tools / rgoslin

Rgoslin Repository for Bioconductor submission
MIT License
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Compilation fails with gcc version 13.2.0 #22

Closed mardam closed 7 months ago

mardam commented 1 year ago

Hi,

I noticed that the compilation of the C++ library fails when using gcc version 13.2.0. I receive the following error message:

src/parser/ParserClasses.cpp:226:34: error: ‘size’ was not declared in this scope
  226 |     return Bitfield::iter(*this, size());
      |                                  ^~~~
make[1]: *** [makefile:57: src/domain/LipidClasses.cpp] Error 1
make[1]: Leaving directory '/tmp/RtmpTIGAtS/R.INSTALL81392a2ba4/rgoslin/src/cppgoslin'
make: *** [Makevars:25: sublibraries] Error 1
ERROR: compilation failed for package ‘rgoslin’
* removing ‘/usr/local/lib/R/site-library/rgoslin’

When I downgrade gcc to version 11.4, it compiles fine.

dominik-kopczynski commented 1 year ago

Thank you, on my way to fixing it.

nilshoffmann commented 7 months ago

@dominik-kopczynski @mardam can you verify that this has been fixed?

dominik-kopczynski commented 7 months ago

Sorry, I thought I had answered this issue already. Yes, the problem is solved and updated in cppgoslin and rgoslin.