Open solivehong opened 7 months ago
Hi Solivehong Genotypes in the "ALT" field can only be IUPAC characters plus dot (.), dash (-) and star (*). please double-check.
Liguo
@liguowang show me error line
chr1 14542 . A G,<NON_REF>
This the normal GVCF line,for mine mind
A quick fix is replacing the pip3 install git+https://github.com/liguowang/CrossMap.git
. please let me know if the problem persists.
Hi Liguowang,
I have the same error with "
Thanks!
Did you use the most recent version of CrossMap? Yes, you could try to replace "
I tried installing the latest version and it worked! Thanks :D
hi wang i crossmap gvcf 2 hg38
version = 0.6.6
I check mapgvcf.py and see split, unsuccessful
pip install crossmap==0.6.1 is work best solivehong