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lijingya / ELMER

Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
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Error when using get.diff.meth() with more than one CPU core #15

Open ghost opened 6 years ago

ghost commented 6 years ago

When using the function get.diff.meth() with parameter cores=2 i get this error:

Progress disabled when using parallel plyr
Error in do.ply(i) : 
  task 1 failed - "could not find function "Stat.diff.meth""
In addition: Warning messages:
1: <anonymous>: ... may be used in an incorrect context: '.fun(piece, ...)'

2: <anonymous>: ... may be used in an incorrect context: '.fun(piece, ...)'

Tried to source the function myself but did not work. Any idea what is causing the problem?

Using just one core works fine.

Best

tiagochst commented 6 years ago

Hello,

the new ELMER version can be found at: https://github.com/tiagochst/ELMER/ Also, the new documentation is at Bioconductor: https://bioconductor.org/packages/devel/bioc/vignettes/ELMER/inst/doc/index.html

Best regards