Open sumitpaliwal opened 5 years ago
I was trying the ELMER pipeline with the TCGA-PAAD data as given here . However, I encountered the following error:
> distal.probes <- get.feature.probe(genome = "hg38", met.platform = "450K") Downloading transcripts information. Using: Human genes (GRCh38.p12) Returning distal probes: 160356 > library(MultiAssayExperiment) > mae <- createMAE(exp = paad.exp, met = paad.met, save = TRUE, linearize.exp = TRUE, + filter.probes = distal.probes, save.filename = "mae_paad.rda", + met.platform = "450K", genome = "hg38", TCGA = TRUE) Downloading genome information (try:0) Using: Human genes (GRCh38.p12) Error in createMAE(exp = paad.exp, met = paad.met, save = TRUE, linearize.exp = TRUE, : Please the gene expression matrix should receive ENSEMBLE IDs
How to resolve this issue? Thanks. Sumit
I was trying the ELMER pipeline with the TCGA-PAAD data as given here . However, I encountered the following error:
How to resolve this issue? Thanks. Sumit